Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
FOXA1P55317 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXA1P55317 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC14.06□□□□□ -0.16
FOXA1P55317 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.06□□□□□ -0.16
FOXA1P55317 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
FOXA1P55317 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA1P55317 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
FOXA1P55317 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC14.05□□□□□ -0.16
FOXA1P55317 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA1P55317 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC14.05□□□□□ -0.16
FOXA1P55317 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA1P55317 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC14.05□□□□□ -0.16
FOXA1P55317 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC14.05□□□□□ -0.16
FOXA1P55317 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC14.05□□□□□ -0.16
FOXA1P55317 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.05□□□□□ -0.16
FOXA1P55317 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA1P55317 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC14.05□□□□□ -0.16
FOXA1P55317 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA1P55317 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA1P55317 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA1P55317 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA1P55317 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA1P55317 SNX21-203ENST00000372541 771 ntTSL 2 BASIC14.05□□□□□ -0.16
FOXA1P55317 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA1P55317 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC14.05□□□□□ -0.16
FOXA1P55317 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC14.05□□□□□ -0.16
FOXA1P55317 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC14.05□□□□□ -0.16
FOXA1P55317 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC14.05□□□□□ -0.16
FOXA1P55317 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC14.05□□□□□ -0.16
FOXA1P55317 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC14.05□□□□□ -0.16
FOXA1P55317 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.05□□□□□ -0.16
FOXA1P55317 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA1P55317 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC14.05□□□□□ -0.16
FOXA1P55317 AC138951.2-201ENST00000623455 1161 ntBASIC14.05□□□□□ -0.16
FOXA1P55317 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC14.05□□□□□ -0.16
FOXA1P55317 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA1P55317 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC14.05□□□□□ -0.16
FOXA1P55317 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA1P55317 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA1P55317 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA1P55317 NCLP1-201ENST00000445357 1963 ntBASIC14.05□□□□□ -0.16
FOXA1P55317 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA1P55317 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA1P55317 KRT8P4-201ENST00000509735 1454 ntBASIC14.05□□□□□ -0.16
FOXA1P55317 GOLGA8IP-202ENST00000611635 2100 ntBASIC14.05□□□□□ -0.16
FOXA1P55317 AL354989.2-201ENST00000435838 1540 ntBASIC14.05□□□□□ -0.16
FOXA1P55317 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA1P55317 TMBIM7P-202ENST00000641474 1516 ntBASIC14.05□□□□□ -0.16
FOXA1P55317 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA1P55317 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC14.05□□□□□ -0.16
FOXA1P55317 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
FOXA1P55317 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
FOXA1P55317 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC14.04□□□□□ -0.16
FOXA1P55317 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC14.04□□□□□ -0.16
FOXA1P55317 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA1P55317 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA1P55317 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
FOXA1P55317 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA1P55317 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC14.04□□□□□ -0.16
FOXA1P55317 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
FOXA1P55317 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
FOXA1P55317 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA1P55317 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
FOXA1P55317 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA1P55317 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
FOXA1P55317 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA1P55317 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA1P55317 AC098614.1-201ENST00000368528 745 ntBASIC14.04□□□□□ -0.16
FOXA1P55317 RPF1-202ENST00000370656 724 ntTSL 2 BASIC14.04□□□□□ -0.16
FOXA1P55317 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
FOXA1P55317 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA1P55317 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA1P55317 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC14.04□□□□□ -0.16
FOXA1P55317 CNN2P8-201ENST00000421872 913 ntBASIC14.04□□□□□ -0.16
FOXA1P55317 RGS5-214ENST00000429865 754 ntTSL 3 BASIC14.04□□□□□ -0.16
FOXA1P55317 GAS5-209ENST00000430245 723 ntTSL 3 BASIC14.04□□□□□ -0.16
FOXA1P55317 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA1P55317 INE1-201ENST00000456273 945 ntBASIC14.04□□□□□ -0.16
FOXA1P55317 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC14.04□□□□□ -0.16
FOXA1P55317 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
FOXA1P55317 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC14.04□□□□□ -0.16
FOXA1P55317 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
FOXA1P55317 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
FOXA1P55317 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
FOXA1P55317 COX11-202ENST00000571584 1108 ntTSL 2 BASIC14.04□□□□□ -0.16
FOXA1P55317 AC132938.2-201ENST00000579188 680 ntBASIC14.04□□□□□ -0.16
FOXA1P55317 AC233724.13-201ENST00000598383 410 ntBASIC14.04□□□□□ -0.16
FOXA1P55317 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC14.04□□□□□ -0.16
FOXA1P55317 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC14.04□□□□□ -0.16
FOXA1P55317 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC14.04□□□□□ -0.16
FOXA1P55317 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC14.04□□□□□ -0.16
FOXA1P55317 AC025048.6-201ENST00000634326 1161 ntBASIC14.04□□□□□ -0.16
FOXA1P55317 AL591163.1-201ENST00000641757 987 ntBASIC14.04□□□□□ -0.16
FOXA1P55317 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA1P55317 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC14.04□□□□□ -0.16
FOXA1P55317 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
FOXA1P55317 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms