Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
BRF2Q9HAW0 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.73■■□□□ 1.07
BRF2Q9HAW0 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
BRF2Q9HAW0 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
BRF2Q9HAW0 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
BRF2Q9HAW0 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
BRF2Q9HAW0 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.73■■□□□ 1.07
BRF2Q9HAW0 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
BRF2Q9HAW0 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
BRF2Q9HAW0 DUSP8P3-201ENST00000399571 1760 ntBASIC21.72■■□□□ 1.07
BRF2Q9HAW0 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.72■■□□□ 1.07
BRF2Q9HAW0 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
BRF2Q9HAW0 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.72■■□□□ 1.07
BRF2Q9HAW0 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
BRF2Q9HAW0 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
BRF2Q9HAW0 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.72■■□□□ 1.07
BRF2Q9HAW0 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.71■■□□□ 1.07
BRF2Q9HAW0 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
BRF2Q9HAW0 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
BRF2Q9HAW0 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
BRF2Q9HAW0 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
BRF2Q9HAW0 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.07
BRF2Q9HAW0 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.07
BRF2Q9HAW0 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
BRF2Q9HAW0 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
BRF2Q9HAW0 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
BRF2Q9HAW0 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
BRF2Q9HAW0 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
BRF2Q9HAW0 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.7■■□□□ 1.06
BRF2Q9HAW0 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.7■■□□□ 1.06
BRF2Q9HAW0 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.7■■□□□ 1.06
BRF2Q9HAW0 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
BRF2Q9HAW0 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
BRF2Q9HAW0 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
BRF2Q9HAW0 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
BRF2Q9HAW0 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
BRF2Q9HAW0 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.69■■□□□ 1.06
BRF2Q9HAW0 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
BRF2Q9HAW0 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
BRF2Q9HAW0 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.68■■□□□ 1.06
BRF2Q9HAW0 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.68■■□□□ 1.06
BRF2Q9HAW0 AC021242.3-201ENST00000607598 1377 ntBASIC21.68■■□□□ 1.06
BRF2Q9HAW0 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
BRF2Q9HAW0 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
BRF2Q9HAW0 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
BRF2Q9HAW0 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
BRF2Q9HAW0 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
BRF2Q9HAW0 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
BRF2Q9HAW0 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
BRF2Q9HAW0 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
BRF2Q9HAW0 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
BRF2Q9HAW0 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.67■■□□□ 1.06
BRF2Q9HAW0 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.67■■□□□ 1.06
BRF2Q9HAW0 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.67■■□□□ 1.06
BRF2Q9HAW0 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.67■■□□□ 1.06
BRF2Q9HAW0 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
BRF2Q9HAW0 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
BRF2Q9HAW0 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.66■■□□□ 1.06
BRF2Q9HAW0 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.66■■□□□ 1.06
BRF2Q9HAW0 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
BRF2Q9HAW0 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
BRF2Q9HAW0 BX664725.1-201ENST00000438252 379 ntBASIC21.66■■□□□ 1.06
BRF2Q9HAW0 PRTG-204ENST00000561292 833 ntTSL 3 BASIC21.66■■□□□ 1.06
BRF2Q9HAW0 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.66■■□□□ 1.06
BRF2Q9HAW0 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.66■■□□□ 1.06
BRF2Q9HAW0 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
BRF2Q9HAW0 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
BRF2Q9HAW0 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
BRF2Q9HAW0 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
BRF2Q9HAW0 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
BRF2Q9HAW0 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
BRF2Q9HAW0 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.65■■□□□ 1.06
BRF2Q9HAW0 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
BRF2Q9HAW0 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.65■■□□□ 1.06
BRF2Q9HAW0 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.65■■□□□ 1.06
BRF2Q9HAW0 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
BRF2Q9HAW0 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
BRF2Q9HAW0 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
BRF2Q9HAW0 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.65■■□□□ 1.06
BRF2Q9HAW0 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
BRF2Q9HAW0 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.64■■□□□ 1.06
BRF2Q9HAW0 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.06
BRF2Q9HAW0 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
BRF2Q9HAW0 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
BRF2Q9HAW0 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
BRF2Q9HAW0 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
BRF2Q9HAW0 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.64■■□□□ 1.05
BRF2Q9HAW0 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
BRF2Q9HAW0 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
BRF2Q9HAW0 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.64■■□□□ 1.05
BRF2Q9HAW0 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.64■■□□□ 1.05
BRF2Q9HAW0 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
BRF2Q9HAW0 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
BRF2Q9HAW0 AC133561.1-201ENST00000568600 2415 ntBASIC21.64■■□□□ 1.05
BRF2Q9HAW0 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.64■■□□□ 1.05
BRF2Q9HAW0 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
BRF2Q9HAW0 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.63■■□□□ 1.05
BRF2Q9HAW0 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
BRF2Q9HAW0 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.63■■□□□ 1.05
BRF2Q9HAW0 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms