Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC16.77■□□□□ 0.28
PRKDCP78527 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC16.77■□□□□ 0.28
PRKDCP78527 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PRKDCP78527 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
PRKDCP78527 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC16.77■□□□□ 0.28
PRKDCP78527 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PRKDCP78527 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
PRKDCP78527 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC16.77■□□□□ 0.28
PRKDCP78527 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC16.77■□□□□ 0.28
PRKDCP78527 AL354811.1-201ENST00000610286 706 ntBASIC16.77■□□□□ 0.28
PRKDCP78527 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PRKDCP78527 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
PRKDCP78527 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC16.77■□□□□ 0.27
PRKDCP78527 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PRKDCP78527 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC16.76■□□□□ 0.27
PRKDCP78527 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PRKDCP78527 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PRKDCP78527 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC16.76■□□□□ 0.27
PRKDCP78527 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
PRKDCP78527 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
PRKDCP78527 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC16.76■□□□□ 0.27
PRKDCP78527 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC16.76■□□□□ 0.27
PRKDCP78527 BID-214ENST00000617586 542 ntTSL 5 BASIC16.76■□□□□ 0.27
PRKDCP78527 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC16.76■□□□□ 0.27
PRKDCP78527 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PRKDCP78527 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PRKDCP78527 TBCB-214ENST00000629269 413 ntTSL 5 BASIC16.76■□□□□ 0.27
PRKDCP78527 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
PRKDCP78527 AC098934.4-201ENST00000564127 592 ntBASIC16.76■□□□□ 0.27
PRKDCP78527 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PRKDCP78527 AC131274.2-201ENST00000580697 1507 ntBASIC16.75■□□□□ 0.27
PRKDCP78527 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PRKDCP78527 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC16.75■□□□□ 0.27
PRKDCP78527 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC16.75■□□□□ 0.27
PRKDCP78527 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PRKDCP78527 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PRKDCP78527 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PRKDCP78527 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PRKDCP78527 GTSE1-AS1-202ENST00000623117 1518 ntBASIC16.75■□□□□ 0.27
PRKDCP78527 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PRKDCP78527 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PRKDCP78527 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PRKDCP78527 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PRKDCP78527 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC16.75■□□□□ 0.27
PRKDCP78527 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
PRKDCP78527 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PRKDCP78527 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PRKDCP78527 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
PRKDCP78527 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PRKDCP78527 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PRKDCP78527 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
PRKDCP78527 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PRKDCP78527 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC16.74■□□□□ 0.27
PRKDCP78527 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PRKDCP78527 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PRKDCP78527 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC16.74■□□□□ 0.27
PRKDCP78527 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC16.74■□□□□ 0.27
PRKDCP78527 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PRKDCP78527 AP004607.4-201ENST00000530158 1459 ntBASIC16.74■□□□□ 0.27
PRKDCP78527 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PRKDCP78527 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC16.73■□□□□ 0.27
PRKDCP78527 AL596275.1-201ENST00000423464 877 ntBASIC16.73■□□□□ 0.27
PRKDCP78527 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC16.73■□□□□ 0.27
PRKDCP78527 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC16.73■□□□□ 0.27
PRKDCP78527 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC16.73■□□□□ 0.27
PRKDCP78527 SLC7A5P2-201ENST00000553010 536 ntBASIC16.73■□□□□ 0.27
PRKDCP78527 AC004854.2-201ENST00000608450 1441 ntBASIC16.73■□□□□ 0.27
PRKDCP78527 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
PRKDCP78527 pRNA.6-201ENST00000610482 90 ntBASIC16.72■□□□□ 0.27
PRKDCP78527 pRNA.5-201ENST00000612139 90 ntBASIC16.72■□□□□ 0.27
PRKDCP78527 pRNA.11-201ENST00000618423 90 ntBASIC16.72■□□□□ 0.27
PRKDCP78527 pRNA.13-201ENST00000619112 90 ntBASIC16.72■□□□□ 0.27
PRKDCP78527 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
PRKDCP78527 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PRKDCP78527 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PRKDCP78527 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
PRKDCP78527 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PRKDCP78527 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC16.72■□□□□ 0.27
PRKDCP78527 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC16.72■□□□□ 0.27
PRKDCP78527 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC16.72■□□□□ 0.27
PRKDCP78527 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
PRKDCP78527 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
PRKDCP78527 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
PRKDCP78527 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PRKDCP78527 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC16.72■□□□□ 0.27
PRKDCP78527 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PRKDCP78527 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC16.71■□□□□ 0.27
PRKDCP78527 RPS2P52-201ENST00000469610 820 ntBASIC16.71■□□□□ 0.27
PRKDCP78527 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC16.71■□□□□ 0.27
PRKDCP78527 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PRKDCP78527 VGF-203ENST00000611537 1622 ntTSL 5 BASIC16.71■□□□□ 0.27
PRKDCP78527 TFG-210ENST00000620299 1289 ntTSL 5 BASIC16.71■□□□□ 0.27
PRKDCP78527 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PRKDCP78527 TPRG1LP1-201ENST00000598702 760 ntBASIC16.71■□□□□ 0.26
PRKDCP78527 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
PRKDCP78527 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PRKDCP78527 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC16.7■□□□□ 0.26
PRKDCP78527 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PRKDCP78527 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC16.7■□□□□ 0.26
PRKDCP78527 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms