Protein–RNA interactions for Protein: P48066

SLC6A11, Sodium- and chloride-dependent GABA transporter 3, humanhuman

Predictions only

Length 632 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A11P48066 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC23.23■■□□□ 1.31
SLC6A11P48066 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC23.23■■□□□ 1.31
SLC6A11P48066 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC23.23■■□□□ 1.31
SLC6A11P48066 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
SLC6A11P48066 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
SLC6A11P48066 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SLC6A11P48066 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
SLC6A11P48066 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC23.22■■□□□ 1.31
SLC6A11P48066 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC23.22■■□□□ 1.31
SLC6A11P48066 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC23.22■■□□□ 1.31
SLC6A11P48066 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC23.22■■□□□ 1.31
SLC6A11P48066 RASA4CP-201ENST00000424092 1398 ntBASIC23.22■■□□□ 1.31
SLC6A11P48066 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC23.22■■□□□ 1.31
SLC6A11P48066 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SLC6A11P48066 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
SLC6A11P48066 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
SLC6A11P48066 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
SLC6A11P48066 ALDH1A3-203ENST00000557963 1670 ntBASIC23.22■■□□□ 1.31
SLC6A11P48066 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SLC6A11P48066 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
SLC6A11P48066 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
SLC6A11P48066 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
SLC6A11P48066 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SLC6A11P48066 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
SLC6A11P48066 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC23.21■■□□□ 1.31
SLC6A11P48066 MIR3181-201ENST00000578512 73 ntBASIC23.21■■□□□ 1.31
SLC6A11P48066 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC23.21■■□□□ 1.31
SLC6A11P48066 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC23.21■■□□□ 1.31
SLC6A11P48066 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC23.21■■□□□ 1.31
SLC6A11P48066 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SLC6A11P48066 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SLC6A11P48066 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SLC6A11P48066 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
SLC6A11P48066 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
SLC6A11P48066 AC009086.3-201ENST00000623486 1008 ntBASIC23.2■■□□□ 1.3
SLC6A11P48066 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
SLC6A11P48066 TMEM202-AS1-202ENST00000565181 2325 ntBASIC23.2■■□□□ 1.3
SLC6A11P48066 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
SLC6A11P48066 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SLC6A11P48066 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
SLC6A11P48066 VGF-203ENST00000611537 1622 ntTSL 5 BASIC23.19■■□□□ 1.3
SLC6A11P48066 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC23.19■■□□□ 1.3
SLC6A11P48066 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
SLC6A11P48066 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SLC6A11P48066 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SLC6A11P48066 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
SLC6A11P48066 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SLC6A11P48066 EI24-204ENST00000527235 1625 ntTSL 5 BASIC23.19■■□□□ 1.3
SLC6A11P48066 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC23.18■■□□□ 1.3
SLC6A11P48066 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SLC6A11P48066 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
SLC6A11P48066 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
SLC6A11P48066 AC099791.1-201ENST00000416440 715 ntBASIC23.18■■□□□ 1.3
SLC6A11P48066 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC23.18■■□□□ 1.3
SLC6A11P48066 AC136469.2-201ENST00000623944 1028 ntBASIC23.18■■□□□ 1.3
SLC6A11P48066 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC23.18■■□□□ 1.3
SLC6A11P48066 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SLC6A11P48066 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SLC6A11P48066 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SLC6A11P48066 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
SLC6A11P48066 AC027682.1-201ENST00000562846 899 ntBASIC23.17■■□□□ 1.3
SLC6A11P48066 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC23.17■■□□□ 1.3
SLC6A11P48066 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
SLC6A11P48066 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
SLC6A11P48066 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC23.17■■□□□ 1.3
SLC6A11P48066 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SLC6A11P48066 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SLC6A11P48066 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SLC6A11P48066 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC23.16■■□□□ 1.3
SLC6A11P48066 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC23.16■■□□□ 1.3
SLC6A11P48066 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC23.16■■□□□ 1.3
SLC6A11P48066 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
SLC6A11P48066 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SLC6A11P48066 AP003733.4-201ENST00000623785 1697 ntBASIC23.16■■□□□ 1.3
SLC6A11P48066 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SLC6A11P48066 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SLC6A11P48066 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
SLC6A11P48066 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC23.15■■□□□ 1.3
SLC6A11P48066 AC092666.2-201ENST00000613287 246 ntBASIC23.15■■□□□ 1.3
SLC6A11P48066 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SLC6A11P48066 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC23.15■■□□□ 1.3
SLC6A11P48066 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SLC6A11P48066 CREM-210ENST00000374721 2020 ntTSL 5 BASIC23.15■■□□□ 1.3
SLC6A11P48066 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
SLC6A11P48066 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
SLC6A11P48066 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
SLC6A11P48066 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC23.14■■□□□ 1.29
SLC6A11P48066 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC23.14■■□□□ 1.29
SLC6A11P48066 pRNA.6-201ENST00000610482 90 ntBASIC23.14■■□□□ 1.29
SLC6A11P48066 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
SLC6A11P48066 pRNA.5-201ENST00000612139 90 ntBASIC23.14■■□□□ 1.29
SLC6A11P48066 pRNA.11-201ENST00000618423 90 ntBASIC23.14■■□□□ 1.29
SLC6A11P48066 pRNA.13-201ENST00000619112 90 ntBASIC23.14■■□□□ 1.29
SLC6A11P48066 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
SLC6A11P48066 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SLC6A11P48066 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SLC6A11P48066 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
SLC6A11P48066 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
SLC6A11P48066 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SLC6A11P48066 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms