Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
BRCA1P38398 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC28.21■■■□□ 2.11
BRCA1P38398 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC28.21■■■□□ 2.11
BRCA1P38398 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC28.21■■■□□ 2.11
BRCA1P38398 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC28.2■■■□□ 2.11
BRCA1P38398 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC28.2■■■□□ 2.11
BRCA1P38398 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC28.2■■■□□ 2.11
BRCA1P38398 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
BRCA1P38398 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC28.2■■■□□ 2.1
BRCA1P38398 GXYLT1P5-201ENST00000614548 1189 ntBASIC28.19■■■□□ 2.1
BRCA1P38398 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
BRCA1P38398 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC28.19■■■□□ 2.1
BRCA1P38398 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC28.19■■■□□ 2.1
BRCA1P38398 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC28.19■■■□□ 2.1
BRCA1P38398 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC28.19■■■□□ 2.1
BRCA1P38398 NTF6G-201ENST00000591094 616 ntBASIC28.19■■■□□ 2.1
BRCA1P38398 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC28.18■■■□□ 2.1
BRCA1P38398 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC28.18■■■□□ 2.1
BRCA1P38398 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
BRCA1P38398 AC016769.1-201ENST00000409132 1010 ntBASIC28.18■■■□□ 2.1
BRCA1P38398 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
BRCA1P38398 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
BRCA1P38398 CDCA4P2-201ENST00000441182 718 ntBASIC28.17■■■□□ 2.1
BRCA1P38398 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC28.17■■■□□ 2.1
BRCA1P38398 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC28.17■■■□□ 2.1
BRCA1P38398 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC28.17■■■□□ 2.1
BRCA1P38398 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC28.17■■■□□ 2.1
BRCA1P38398 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC28.17■■■□□ 2.1
BRCA1P38398 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
BRCA1P38398 NT5C3AP1-201ENST00000394500 1012 ntBASIC28.17■■■□□ 2.1
BRCA1P38398 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC28.17■■■□□ 2.1
BRCA1P38398 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
BRCA1P38398 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC28.17■■■□□ 2.1
BRCA1P38398 pRNA.6-201ENST00000610482 90 ntBASIC28.17■■■□□ 2.1
BRCA1P38398 pRNA.5-201ENST00000612139 90 ntBASIC28.17■■■□□ 2.1
BRCA1P38398 pRNA.11-201ENST00000618423 90 ntBASIC28.17■■■□□ 2.1
BRCA1P38398 pRNA.13-201ENST00000619112 90 ntBASIC28.17■■■□□ 2.1
BRCA1P38398 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
BRCA1P38398 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
BRCA1P38398 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
BRCA1P38398 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC28.16■■■□□ 2.1
BRCA1P38398 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
BRCA1P38398 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
BRCA1P38398 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
BRCA1P38398 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC28.15■■■□□ 2.1
BRCA1P38398 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
BRCA1P38398 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
BRCA1P38398 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
BRCA1P38398 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC28.15■■■□□ 2.1
BRCA1P38398 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC28.15■■■□□ 2.1
BRCA1P38398 AC010501.1-201ENST00000606270 1962 ntBASIC28.15■■■□□ 2.1
BRCA1P38398 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
BRCA1P38398 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
BRCA1P38398 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC28.15■■■□□ 2.1
BRCA1P38398 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
BRCA1P38398 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC28.15■■■□□ 2.1
BRCA1P38398 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC28.15■■■□□ 2.1
BRCA1P38398 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC28.15■■■□□ 2.1
BRCA1P38398 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
BRCA1P38398 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC28.14■■■□□ 2.1
BRCA1P38398 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC28.14■■■□□ 2.1
BRCA1P38398 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC28.14■■■□□ 2.1
BRCA1P38398 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC28.14■■■□□ 2.1
BRCA1P38398 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC28.14■■■□□ 2.1
BRCA1P38398 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC28.14■■■□□ 2.1
BRCA1P38398 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC28.14■■■□□ 2.1
BRCA1P38398 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC28.14■■■□□ 2.1
BRCA1P38398 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC28.14■■■□□ 2.09
BRCA1P38398 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC28.13■■■□□ 2.09
BRCA1P38398 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC28.13■■■□□ 2.09
BRCA1P38398 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC28.13■■■□□ 2.09
BRCA1P38398 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
BRCA1P38398 USF2-207ENST00000595068 1612 ntTSL 5 BASIC28.13■■■□□ 2.09
BRCA1P38398 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC28.12■■■□□ 2.09
BRCA1P38398 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC28.12■■■□□ 2.09
BRCA1P38398 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC28.12■■■□□ 2.09
BRCA1P38398 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC28.12■■■□□ 2.09
BRCA1P38398 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC28.12■■■□□ 2.09
BRCA1P38398 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC28.12■■■□□ 2.09
BRCA1P38398 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
BRCA1P38398 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC28.12■■■□□ 2.09
BRCA1P38398 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC28.12■■■□□ 2.09
BRCA1P38398 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
BRCA1P38398 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC28.12■■■□□ 2.09
BRCA1P38398 ST7-202ENST00000323984 2142 ntTSL 5 BASIC28.12■■■□□ 2.09
BRCA1P38398 ST7-207ENST00000393449 2127 ntTSL 5 BASIC28.12■■■□□ 2.09
BRCA1P38398 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC28.12■■■□□ 2.09
BRCA1P38398 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC28.12■■■□□ 2.09
BRCA1P38398 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC28.12■■■□□ 2.09
BRCA1P38398 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC28.12■■■□□ 2.09
BRCA1P38398 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC28.11■■■□□ 2.09
BRCA1P38398 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC28.11■■■□□ 2.09
BRCA1P38398 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
BRCA1P38398 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC28.11■■■□□ 2.09
BRCA1P38398 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC28.11■■■□□ 2.09
BRCA1P38398 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC28.11■■■□□ 2.09
BRCA1P38398 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC28.11■■■□□ 2.09
BRCA1P38398 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC28.11■■■□□ 2.09
BRCA1P38398 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC28.11■■■□□ 2.09
BRCA1P38398 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC28.11■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms