Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AC126544.1-201ENST00000580842 1059 ntBASIC27.76■■■□□ 2.03
COL4A5P29400 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC27.76■■■□□ 2.03
COL4A5P29400 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC27.76■■■□□ 2.03
COL4A5P29400 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC27.76■■■□□ 2.03
COL4A5P29400 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC27.76■■■□□ 2.03
COL4A5P29400 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC27.75■■■□□ 2.03
COL4A5P29400 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC27.75■■■□□ 2.03
COL4A5P29400 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
COL4A5P29400 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC27.75■■■□□ 2.03
COL4A5P29400 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
COL4A5P29400 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
COL4A5P29400 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC27.75■■■□□ 2.03
COL4A5P29400 AC012414.1-201ENST00000556676 535 ntBASIC27.75■■■□□ 2.03
COL4A5P29400 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC27.75■■■□□ 2.03
COL4A5P29400 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
COL4A5P29400 AL022069.1-201ENST00000568025 1636 ntBASIC27.74■■■□□ 2.03
COL4A5P29400 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC27.74■■■□□ 2.03
COL4A5P29400 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC27.73■■■□□ 2.03
COL4A5P29400 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
COL4A5P29400 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC27.73■■■□□ 2.03
COL4A5P29400 CCDC92B-201ENST00000575506 885 ntBASIC27.73■■■□□ 2.03
COL4A5P29400 pRNA.6-201ENST00000610482 90 ntBASIC27.73■■■□□ 2.03
COL4A5P29400 pRNA.5-201ENST00000612139 90 ntBASIC27.73■■■□□ 2.03
COL4A5P29400 pRNA.11-201ENST00000618423 90 ntBASIC27.73■■■□□ 2.03
COL4A5P29400 pRNA.13-201ENST00000619112 90 ntBASIC27.73■■■□□ 2.03
COL4A5P29400 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC27.73■■■□□ 2.03
COL4A5P29400 USF2-207ENST00000595068 1612 ntTSL 5 BASIC27.72■■■□□ 2.03
COL4A5P29400 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
COL4A5P29400 AC123595.1-201ENST00000440769 1046 ntBASIC27.72■■■□□ 2.03
COL4A5P29400 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC27.72■■■□□ 2.03
COL4A5P29400 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC27.72■■■□□ 2.03
COL4A5P29400 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC27.72■■■□□ 2.03
COL4A5P29400 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC27.72■■■□□ 2.03
COL4A5P29400 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC27.72■■■□□ 2.03
COL4A5P29400 NME4-202ENST00000382940 766 ntTSL 3 BASIC27.72■■■□□ 2.03
COL4A5P29400 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC27.72■■■□□ 2.03
COL4A5P29400 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC27.72■■■□□ 2.03
COL4A5P29400 NME4-211ENST00000620944 1193 ntTSL 2 BASIC27.72■■■□□ 2.03
COL4A5P29400 AC092803.2-201ENST00000564287 1899 ntBASIC27.71■■■□□ 2.03
COL4A5P29400 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC27.71■■■□□ 2.03
COL4A5P29400 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC27.71■■■□□ 2.03
COL4A5P29400 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC27.71■■■□□ 2.03
COL4A5P29400 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC27.71■■■□□ 2.03
COL4A5P29400 IGHV3-19-201ENST00000521488 291 ntBASIC27.71■■■□□ 2.03
COL4A5P29400 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC27.71■■■□□ 2.03
COL4A5P29400 VPS53-216ENST00000574029 585 ntTSL 4 BASIC27.71■■■□□ 2.03
COL4A5P29400 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC27.71■■■□□ 2.03
COL4A5P29400 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
COL4A5P29400 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC27.7■■■□□ 2.03
COL4A5P29400 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
COL4A5P29400 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC27.7■■■□□ 2.02
COL4A5P29400 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC27.7■■■□□ 2.02
COL4A5P29400 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC27.69■■■□□ 2.02
COL4A5P29400 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
COL4A5P29400 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC27.69■■■□□ 2.02
COL4A5P29400 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
COL4A5P29400 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC27.69■■■□□ 2.02
COL4A5P29400 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
COL4A5P29400 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
COL4A5P29400 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
COL4A5P29400 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC27.69■■■□□ 2.02
COL4A5P29400 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
COL4A5P29400 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
COL4A5P29400 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
COL4A5P29400 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC27.69■■■□□ 2.02
COL4A5P29400 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC27.68■■■□□ 2.02
COL4A5P29400 AL358852.1-201ENST00000623174 1268 ntBASIC27.68■■■□□ 2.02
COL4A5P29400 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
COL4A5P29400 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC27.68■■■□□ 2.02
COL4A5P29400 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC27.68■■■□□ 2.02
COL4A5P29400 CD37-213ENST00000598095 1598 ntTSL 2 BASIC27.67■■■□□ 2.02
COL4A5P29400 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC27.67■■■□□ 2.02
COL4A5P29400 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC27.67■■■□□ 2.02
COL4A5P29400 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC27.67■■■□□ 2.02
COL4A5P29400 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
COL4A5P29400 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
COL4A5P29400 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC27.67■■■□□ 2.02
COL4A5P29400 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
COL4A5P29400 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC27.67■■■□□ 2.02
COL4A5P29400 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
COL4A5P29400 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
COL4A5P29400 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC27.66■■■□□ 2.02
COL4A5P29400 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC27.66■■■□□ 2.02
COL4A5P29400 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC27.66■■■□□ 2.02
COL4A5P29400 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
COL4A5P29400 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
COL4A5P29400 MIR572-201ENST00000384983 95 ntBASIC27.65■■■□□ 2.02
COL4A5P29400 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC27.65■■■□□ 2.02
COL4A5P29400 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
COL4A5P29400 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC27.65■■■□□ 2.02
COL4A5P29400 KRT18P61-201ENST00000585825 1298 ntBASIC27.65■■■□□ 2.02
COL4A5P29400 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
COL4A5P29400 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
COL4A5P29400 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
COL4A5P29400 AICDA-202ENST00000537228 667 ntTSL 5 BASIC27.65■■■□□ 2.02
COL4A5P29400 TERF1P2-201ENST00000583350 1212 ntBASIC27.65■■■□□ 2.02
COL4A5P29400 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC27.64■■■□□ 2.02
COL4A5P29400 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
COL4A5P29400 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC27.64■■■□□ 2.02
COL4A5P29400 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC27.64■■■□□ 2.02
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms