Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
LHX1P48742 BANF1P3-201ENST00000412556 261 ntBASIC15.31■□□□□ 0.04
LHX1P48742 AC026320.2-201ENST00000434379 478 ntBASIC15.31■□□□□ 0.04
LHX1P48742 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC15.31■□□□□ 0.04
LHX1P48742 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC15.31■□□□□ 0.04
LHX1P48742 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LHX1P48742 AC116345.2-201ENST00000512837 523 ntBASIC15.31■□□□□ 0.04
LHX1P48742 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LHX1P48742 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC15.31■□□□□ 0.04
LHX1P48742 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC15.31■□□□□ 0.04
LHX1P48742 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LHX1P48742 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LHX1P48742 AC105129.2-201ENST00000559536 390 ntBASIC15.31■□□□□ 0.04
LHX1P48742 AC026803.1-201ENST00000569130 274 ntBASIC15.31■□□□□ 0.04
LHX1P48742 SKA2-205ENST00000580541 689 ntTSL 3 BASIC15.31■□□□□ 0.04
LHX1P48742 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC15.31■□□□□ 0.04
LHX1P48742 AC012044.1-201ENST00000603431 297 ntBASIC15.31■□□□□ 0.04
LHX1P48742 AL606495.2-201ENST00000605867 535 ntBASIC15.31■□□□□ 0.04
LHX1P48742 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LHX1P48742 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LHX1P48742 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LHX1P48742 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
LHX1P48742 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
LHX1P48742 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LHX1P48742 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
LHX1P48742 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC15.31■□□□□ 0.04
LHX1P48742 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LHX1P48742 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LHX1P48742 CCT8L1P-201ENST00000465400 1674 ntBASIC15.31■□□□□ 0.04
LHX1P48742 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC15.31■□□□□ 0.04
LHX1P48742 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
LHX1P48742 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LHX1P48742 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LHX1P48742 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LHX1P48742 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LHX1P48742 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
LHX1P48742 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
LHX1P48742 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LHX1P48742 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
LHX1P48742 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC15.3■□□□□ 0.04
LHX1P48742 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC15.3■□□□□ 0.04
LHX1P48742 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
LHX1P48742 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
LHX1P48742 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LHX1P48742 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LHX1P48742 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LHX1P48742 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC15.3■□□□□ 0.04
LHX1P48742 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LHX1P48742 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LHX1P48742 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LHX1P48742 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LHX1P48742 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC15.3■□□□□ 0.04
LHX1P48742 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC15.3■□□□□ 0.04
LHX1P48742 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LHX1P48742 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC15.3■□□□□ 0.04
LHX1P48742 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC15.3■□□□□ 0.04
LHX1P48742 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
LHX1P48742 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC15.3■□□□□ 0.04
LHX1P48742 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC15.3■□□□□ 0.04
LHX1P48742 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC15.3■□□□□ 0.04
LHX1P48742 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC15.3■□□□□ 0.04
LHX1P48742 FAM90A2P-201ENST00000511144 1395 ntBASIC15.3■□□□□ 0.04
LHX1P48742 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC15.3■□□□□ 0.04
LHX1P48742 AC134698.3-201ENST00000523880 214 ntBASIC15.3■□□□□ 0.04
LHX1P48742 FAM90A25P-201ENST00000528404 1395 ntBASIC15.3■□□□□ 0.04
LHX1P48742 ADK-205ENST00000539909 1866 ntTSL 2 BASIC15.3■□□□□ 0.04
LHX1P48742 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC15.3■□□□□ 0.04
LHX1P48742 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
LHX1P48742 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC15.3■□□□□ 0.04
LHX1P48742 PHBP15-201ENST00000574228 665 ntBASIC15.3■□□□□ 0.04
LHX1P48742 NAT9-220ENST00000582870 896 ntTSL 5 BASIC15.3■□□□□ 0.04
LHX1P48742 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC15.3■□□□□ 0.04
LHX1P48742 AC006453.1-201ENST00000636037 1257 ntBASIC15.3■□□□□ 0.04
LHX1P48742 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LHX1P48742 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LHX1P48742 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LHX1P48742 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LHX1P48742 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
LHX1P48742 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC15.29■□□□□ 0.04
LHX1P48742 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC15.29■□□□□ 0.04
LHX1P48742 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 KRT8P19-201ENST00000551916 1455 ntBASIC15.29■□□□□ 0.04
LHX1P48742 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
LHX1P48742 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC15.29■□□□□ 0.04
LHX1P48742 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LHX1P48742 KRT18P9-201ENST00000604826 1300 ntBASIC15.29■□□□□ 0.04
LHX1P48742 AC067750.1-201ENST00000608826 6545 ntBASIC15.29■□□□□ 0.04
LHX1P48742 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
LHX1P48742 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms