Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC13.27□□□□□ -0.28
HOXD4P09016 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC13.27□□□□□ -0.28
HOXD4P09016 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXD4P09016 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXD4P09016 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXD4P09016 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC13.27□□□□□ -0.28
HOXD4P09016 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXD4P09016 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
HOXD4P09016 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXD4P09016 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC13.27□□□□□ -0.28
HOXD4P09016 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
HOXD4P09016 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 SDCCAG3P2-201ENST00000326105 1023 ntBASIC13.27□□□□□ -0.29
HOXD4P09016 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXD4P09016 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC13.27□□□□□ -0.29
HOXD4P09016 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 HLA-DQB2-229ENST00000411527 1059 ntBASIC13.27□□□□□ -0.29
HOXD4P09016 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 SKA2-202ENST00000437036 625 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXD4P09016 SPTLC1P5-201ENST00000450718 252 ntBASIC13.27□□□□□ -0.29
HOXD4P09016 RNMTL1P1-201ENST00000454103 560 ntBASIC13.27□□□□□ -0.29
HOXD4P09016 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC13.27□□□□□ -0.29
HOXD4P09016 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
HOXD4P09016 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXD4P09016 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC13.27□□□□□ -0.29
HOXD4P09016 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXD4P09016 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC13.27□□□□□ -0.29
HOXD4P09016 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC13.27□□□□□ -0.29
HOXD4P09016 RN7SL774P-201ENST00000577467 290 ntBASIC13.27□□□□□ -0.29
HOXD4P09016 AC132192.2-201ENST00000596206 1147 ntBASIC13.27□□□□□ -0.29
HOXD4P09016 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
HOXD4P09016 AC026740.1-201ENST00000607068 791 ntBASIC13.27□□□□□ -0.29
HOXD4P09016 AC090164.2-201ENST00000611487 516 ntBASIC13.27□□□□□ -0.29
HOXD4P09016 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXD4P09016 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXD4P09016 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC13.27□□□□□ -0.29
HOXD4P09016 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
HOXD4P09016 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
HOXD4P09016 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC13.27□□□□□ -0.29
HOXD4P09016 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC13.27□□□□□ -0.29
HOXD4P09016 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
HOXD4P09016 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXD4P09016 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.27□□□□□ -0.29
HOXD4P09016 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXD4P09016 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
HOXD4P09016 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXD4P09016 NUTM2HP-201ENST00000442076 2498 ntBASIC13.27□□□□□ -0.29
HOXD4P09016 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXD4P09016 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC13.27□□□□□ -0.29
HOXD4P09016 C5orf56-206ENST00000612967 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD4P09016 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC13.26□□□□□ -0.29
HOXD4P09016 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
HOXD4P09016 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
HOXD4P09016 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD4P09016 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD4P09016 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
HOXD4P09016 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD4P09016 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD4P09016 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD4P09016 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD4P09016 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
HOXD4P09016 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD4P09016 TASP1-201ENST00000337743 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD4P09016 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD4P09016 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD4P09016 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
HOXD4P09016 NPPA-201ENST00000376476 728 ntTSL 3 BASIC13.26□□□□□ -0.29
HOXD4P09016 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
HOXD4P09016 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
HOXD4P09016 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC13.26□□□□□ -0.29
HOXD4P09016 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC13.26□□□□□ -0.29
HOXD4P09016 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC13.26□□□□□ -0.29
HOXD4P09016 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD4P09016 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HOXD4P09016 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
HOXD4P09016 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC13.26□□□□□ -0.29
HOXD4P09016 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms