Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SMC1BQ8NDV3 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 NORAD-201ENST00000565493 5339 ntBASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 ST13P19-201ENST00000442505 1124 ntBASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 RN7SL578P-201ENST00000477781 283 ntBASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 ACY3-202ENST00000529256 933 ntTSL 3 BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 NAA40-205ENST00000539656 577 ntTSL 4 BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 BMF-206ENST00000558774 671 ntTSL 3 BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 NDUFB10P1-201ENST00000567319 521 ntBASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 ANKRD26P1-203ENST00000569528 966 ntBASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 AC012617.1-202ENST00000586488 509 ntTSL 2 BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SMC1BQ8NDV3 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 MYB-242ENST00000618728 3545 ntTSL 5 BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 LINC00554-201ENST00000564841 3011 ntBASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 BLVRA-201ENST00000265523 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 SIRPB3P-201ENST00000340424 1216 ntBASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 KRT18P44-201ENST00000416086 1285 ntBASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 HNRNPA1P2-207ENST00000432375 960 ntBASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 AC025594.1-201ENST00000469533 543 ntBASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 AC092910.2-201ENST00000491262 348 ntBASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 IGHVIII-5-2-201ENST00000522505 261 ntBASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 AC008750.2-201ENST00000526996 627 ntTSL 3 BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 AL513165.2-203ENST00000537239 717 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 AC009093.2-201ENST00000563477 546 ntTSL 4 BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 AC005865.2-202ENST00000635814 725 ntBASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SMC1BQ8NDV3 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms