Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC15.07■□□□□ 0
PTPN9P43378 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
PTPN9P43378 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
PTPN9P43378 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.07■□□□□ 0
PTPN9P43378 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
PTPN9P43378 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC15.07■□□□□ 0
PTPN9P43378 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC15.07■□□□□ 0
PTPN9P43378 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC15.07■□□□□ 0
PTPN9P43378 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
PTPN9P43378 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC15.07■□□□□ 0
PTPN9P43378 AL359881.3-201ENST00000602640 1721 ntBASIC15.07■□□□□ 0
PTPN9P43378 AC018629.1-201ENST00000623381 1736 ntBASIC15.07■□□□□ 0
PTPN9P43378 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC15.07■□□□□ 0
PTPN9P43378 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
PTPN9P43378 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC15.07■□□□□ 0
PTPN9P43378 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC15.07■□□□□ 0
PTPN9P43378 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC15.07■□□□□ 0
PTPN9P43378 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC15.07■□□□□ 0
PTPN9P43378 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTPN9P43378 DPM3-202ENST00000368399 517 ntBASIC15.07■□□□□ 0
PTPN9P43378 MIR1908-201ENST00000410394 80 ntBASIC15.07■□□□□ 0
PTPN9P43378 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC15.07■□□□□ 0
PTPN9P43378 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC15.07■□□□□ 0
PTPN9P43378 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC15.07■□□□□ 0
PTPN9P43378 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC15.07■□□□□ 0
PTPN9P43378 RN7SL163P-201ENST00000583100 276 ntBASIC15.07■□□□□ 0
PTPN9P43378 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC15.07■□□□□ 0
PTPN9P43378 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTPN9P43378 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC15.07■□□□□ 0
PTPN9P43378 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC15.07■□□□□ 0
PTPN9P43378 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTPN9P43378 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
PTPN9P43378 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
PTPN9P43378 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC15.07■□□□□ 0
PTPN9P43378 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC15.07■□□□□ 0
PTPN9P43378 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC15.07■□□□□ 0
PTPN9P43378 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC15.07■□□□□ 0
PTPN9P43378 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC15.07■□□□□ 0
PTPN9P43378 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTPN9P43378 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC15.07■□□□□ 0
PTPN9P43378 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC15.07■□□□□ 0
PTPN9P43378 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC15.07■□□□□ 0
PTPN9P43378 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTPN9P43378 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTPN9P43378 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC15.07■□□□□ 0
PTPN9P43378 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
PTPN9P43378 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTPN9P43378 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC15.07■□□□□ 0
PTPN9P43378 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
PTPN9P43378 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTPN9P43378 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC15.07■□□□□ 0
PTPN9P43378 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTPN9P43378 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
PTPN9P43378 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTPN9P43378 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC15.06■□□□□ 0
PTPN9P43378 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC15.06■□□□□ 0
PTPN9P43378 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTPN9P43378 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
PTPN9P43378 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
PTPN9P43378 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC15.06■□□□□ 0
PTPN9P43378 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC15.06■□□□□ 0
PTPN9P43378 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC15.06■□□□□ 0
PTPN9P43378 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTPN9P43378 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC15.06■□□□□ 0
PTPN9P43378 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
PTPN9P43378 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
PTPN9P43378 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC15.06■□□□□ 0
PTPN9P43378 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC15.06■□□□□ 0
PTPN9P43378 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTPN9P43378 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC15.06■□□□□ 0
PTPN9P43378 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC15.06■□□□□ 0
PTPN9P43378 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTPN9P43378 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC15.06■□□□□ 0
PTPN9P43378 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTPN9P43378 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTPN9P43378 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC15.06■□□□□ 0
PTPN9P43378 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC15.06■□□□□ 0
PTPN9P43378 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC15.06■□□□□ 0
PTPN9P43378 AC078875.1-201ENST00000431907 724 ntBASIC15.06■□□□□ 0
PTPN9P43378 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC15.06■□□□□ 0
PTPN9P43378 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC15.06■□□□□ 0
PTPN9P43378 SERPINA13P-202ENST00000478994 924 ntBASIC15.06■□□□□ 0
PTPN9P43378 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC15.06■□□□□ 0
PTPN9P43378 AC126915.1-201ENST00000522847 1038 ntBASIC15.06■□□□□ 0
PTPN9P43378 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC15.06■□□□□ 0
PTPN9P43378 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC15.06■□□□□ 0
PTPN9P43378 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTPN9P43378 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC15.06■□□□□ 0
PTPN9P43378 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC15.06■□□□□ 0
PTPN9P43378 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC15.06■□□□□ 0
PTPN9P43378 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC15.06■□□□□ 0
PTPN9P43378 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC15.06■□□□□ 0
PTPN9P43378 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC15.06■□□□□ 0
PTPN9P43378 AC090164.2-201ENST00000611487 516 ntBASIC15.06■□□□□ 0
PTPN9P43378 AL008638.5-201ENST00000623814 1298 ntBASIC15.06■□□□□ 0
PTPN9P43378 ABBA01031663.1-201ENST00000635630 790 ntBASIC15.06■□□□□ 0
PTPN9P43378 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
PTPN9P43378 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PTPN9P43378 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
PTPN9P43378 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms