Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SIX3O95343 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
SIX3O95343 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SIX3O95343 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
SIX3O95343 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC14.26□□□□□ -0.13
SIX3O95343 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SIX3O95343 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
SIX3O95343 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC14.25□□□□□ -0.13
SIX3O95343 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
SIX3O95343 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC14.25□□□□□ -0.13
SIX3O95343 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SIX3O95343 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC14.25□□□□□ -0.13
SIX3O95343 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
SIX3O95343 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
SIX3O95343 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SIX3O95343 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC14.25□□□□□ -0.13
SIX3O95343 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SIX3O95343 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
SIX3O95343 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SIX3O95343 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
SIX3O95343 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SIX3O95343 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.25□□□□□ -0.13
SIX3O95343 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SIX3O95343 AC007326.2-201ENST00000624224 7579 ntBASIC14.25□□□□□ -0.13
SIX3O95343 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SIX3O95343 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SIX3O95343 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
SIX3O95343 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SIX3O95343 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SIX3O95343 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SIX3O95343 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SIX3O95343 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
SIX3O95343 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC14.25□□□□□ -0.13
SIX3O95343 PTPA-220ENST00000436883 532 ntTSL 4 BASIC14.25□□□□□ -0.13
SIX3O95343 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SIX3O95343 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC14.25□□□□□ -0.13
SIX3O95343 CICP12-201ENST00000455801 843 ntBASIC14.25□□□□□ -0.13
SIX3O95343 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SIX3O95343 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SIX3O95343 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SIX3O95343 RN7SL692P-201ENST00000464677 288 ntBASIC14.25□□□□□ -0.13
SIX3O95343 FUZ-207ENST00000526575 482 ntTSL 4 BASIC14.25□□□□□ -0.13
SIX3O95343 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
SIX3O95343 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC14.25□□□□□ -0.13
SIX3O95343 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC14.25□□□□□ -0.13
SIX3O95343 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
SIX3O95343 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC14.25□□□□□ -0.13
SIX3O95343 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
SIX3O95343 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC14.25□□□□□ -0.13
SIX3O95343 AC015936.2-201ENST00000593177 259 ntBASIC14.25□□□□□ -0.13
SIX3O95343 AC233724.13-201ENST00000598383 410 ntBASIC14.25□□□□□ -0.13
SIX3O95343 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC14.25□□□□□ -0.13
SIX3O95343 AC138951.2-201ENST00000623455 1161 ntBASIC14.25□□□□□ -0.13
SIX3O95343 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC14.25□□□□□ -0.13
SIX3O95343 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SIX3O95343 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
SIX3O95343 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
SIX3O95343 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SIX3O95343 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SIX3O95343 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC14.25□□□□□ -0.13
SIX3O95343 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SIX3O95343 AL354989.2-201ENST00000435838 1540 ntBASIC14.25□□□□□ -0.13
SIX3O95343 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SIX3O95343 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
SIX3O95343 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC14.25□□□□□ -0.13
SIX3O95343 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
SIX3O95343 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
SIX3O95343 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SIX3O95343 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC14.24□□□□□ -0.13
SIX3O95343 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SIX3O95343 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SIX3O95343 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.24□□□□□ -0.13
SIX3O95343 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SIX3O95343 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
SIX3O95343 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
SIX3O95343 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SIX3O95343 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SIX3O95343 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
SIX3O95343 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SIX3O95343 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SIX3O95343 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
SIX3O95343 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
SIX3O95343 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SIX3O95343 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC14.24□□□□□ -0.13
SIX3O95343 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
SIX3O95343 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SIX3O95343 GRAP-202ENST00000395635 834 ntTSL 2 BASIC14.24□□□□□ -0.13
SIX3O95343 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC14.24□□□□□ -0.13
SIX3O95343 AL161932.2-201ENST00000435436 679 ntBASIC14.24□□□□□ -0.13
SIX3O95343 TTTY23B-201ENST00000442790 549 ntBASIC14.24□□□□□ -0.13
SIX3O95343 COX20P2-201ENST00000452636 358 ntBASIC14.24□□□□□ -0.13
SIX3O95343 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC14.24□□□□□ -0.13
SIX3O95343 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC14.24□□□□□ -0.13
SIX3O95343 COX5BP1-201ENST00000507622 393 ntBASIC14.24□□□□□ -0.13
SIX3O95343 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC14.24□□□□□ -0.13
SIX3O95343 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC14.24□□□□□ -0.13
SIX3O95343 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC14.24□□□□□ -0.13
SIX3O95343 AL358472.3-201ENST00000608147 415 ntBASIC14.24□□□□□ -0.13
SIX3O95343 AL022328.1-201ENST00000610050 478 ntBASIC14.24□□□□□ -0.13
SIX3O95343 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms