Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN9P43378 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
PTPN9P43378 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN9P43378 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN9P43378 AC018735.1-201ENST00000437208 1502 ntBASIC15.09■□□□□ 0.01
PTPN9P43378 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN9P43378 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN9P43378 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN9P43378 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC15.09■□□□□ 0.01
PTPN9P43378 XBP1P1-201ENST00000436573 652 ntBASIC15.09■□□□□ 0.01
PTPN9P43378 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC15.09■□□□□ 0.01
PTPN9P43378 OR2R1P-201ENST00000441404 914 ntBASIC15.09■□□□□ 0.01
PTPN9P43378 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC15.09■□□□□ 0.01
PTPN9P43378 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC15.09■□□□□ 0.01
PTPN9P43378 FADS2-212ENST00000522639 360 ntTSL 5 BASIC15.09■□□□□ 0.01
PTPN9P43378 PGAM1P5-201ENST00000548011 764 ntBASIC15.09■□□□□ 0.01
PTPN9P43378 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC15.09■□□□□ 0.01
PTPN9P43378 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC15.09■□□□□ 0.01
PTPN9P43378 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC15.09■□□□□ 0.01
PTPN9P43378 FADS2-215ENST00000574708 385 ntTSL 3 BASIC15.09■□□□□ 0.01
PTPN9P43378 AL008721.1-201ENST00000609964 604 ntBASIC15.09■□□□□ 0.01
PTPN9P43378 MIR6752-201ENST00000618442 71 ntBASIC15.09■□□□□ 0.01
PTPN9P43378 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC15.09■□□□□ 0.01
PTPN9P43378 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC15.09■□□□□ 0.01
PTPN9P43378 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN9P43378 AC068587.8-201ENST00000641239 219 ntBASIC15.09■□□□□ 0.01
PTPN9P43378 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
PTPN9P43378 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN9P43378 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN9P43378 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC15.09■□□□□ 0.01
PTPN9P43378 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC15.09■□□□□ 0.01
PTPN9P43378 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN9P43378 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN9P43378 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN9P43378 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN9P43378 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN9P43378 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PTPN9P43378 AC011474.4-201ENST00000623523 2076 ntBASIC15.08■□□□□ 0.01
PTPN9P43378 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
PTPN9P43378 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
PTPN9P43378 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
PTPN9P43378 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC15.08■□□□□ 0.01
PTPN9P43378 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
PTPN9P43378 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
PTPN9P43378 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
PTPN9P43378 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
PTPN9P43378 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
PTPN9P43378 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
PTPN9P43378 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
PTPN9P43378 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC15.08■□□□□ 0
PTPN9P43378 MST1P2-201ENST00000457982 2291 ntBASIC15.08■□□□□ 0
PTPN9P43378 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC15.08■□□□□ 0
PTPN9P43378 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.08■□□□□ 0
PTPN9P43378 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.08■□□□□ 0
PTPN9P43378 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
PTPN9P43378 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC15.08■□□□□ 0
PTPN9P43378 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
PTPN9P43378 KRTAP10-13P-201ENST00000412914 571 ntBASIC15.08■□□□□ 0
PTPN9P43378 PTPA-218ENST00000435132 618 ntTSL 2 BASIC15.08■□□□□ 0
PTPN9P43378 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC15.08■□□□□ 0
PTPN9P43378 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC15.08■□□□□ 0
PTPN9P43378 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC15.08■□□□□ 0
PTPN9P43378 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC15.08■□□□□ 0
PTPN9P43378 PAM16-211ENST00000575848 518 ntTSL 3 BASIC15.08■□□□□ 0
PTPN9P43378 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
PTPN9P43378 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC15.08■□□□□ 0
PTPN9P43378 AC091271.1-201ENST00000611877 1162 ntBASIC15.08■□□□□ 0
PTPN9P43378 AL591471.1-201ENST00000621855 229 ntBASIC15.08■□□□□ 0
PTPN9P43378 DDX5-235ENST00000630471 473 ntTSL 4 BASIC15.08■□□□□ 0
PTPN9P43378 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC15.08■□□□□ 0
PTPN9P43378 AC004923.1-202ENST00000642106 209 ntBASIC15.08■□□□□ 0
PTPN9P43378 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0
PTPN9P43378 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC15.08■□□□□ 0
PTPN9P43378 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
PTPN9P43378 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0
PTPN9P43378 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC15.08■□□□□ 0
PTPN9P43378 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
PTPN9P43378 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
PTPN9P43378 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC15.08■□□□□ 0
PTPN9P43378 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC15.08■□□□□ 0
PTPN9P43378 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
PTPN9P43378 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC15.08■□□□□ 0
PTPN9P43378 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC15.08■□□□□ 0
PTPN9P43378 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
PTPN9P43378 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
PTPN9P43378 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC15.08■□□□□ 0
PTPN9P43378 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
PTPN9P43378 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
PTPN9P43378 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC15.08■□□□□ 0
PTPN9P43378 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC15.08■□□□□ 0
PTPN9P43378 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
PTPN9P43378 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC15.08■□□□□ 0
PTPN9P43378 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC15.08■□□□□ 0
PTPN9P43378 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
PTPN9P43378 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC15.07■□□□□ 0
PTPN9P43378 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTPN9P43378 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC15.07■□□□□ 0
PTPN9P43378 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
PTPN9P43378 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PTPN9P43378 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms