Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 MPV17-205ENST00000402310 906 ntTSL 5 BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 USB1-202ENST00000423271 1217 ntTSL 2 BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 RPL7P3-201ENST00000441388 714 ntBASIC15.13■□□□□ 0.01
PCDH9Q9HC56 GPR53P-205ENST00000457298 1084 ntBASIC15.13■□□□□ 0.01
PCDH9Q9HC56 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 FTLP10-202ENST00000505798 471 ntBASIC15.13■□□□□ 0.01
PCDH9Q9HC56 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 AC239800.4-201ENST00000603712 296 ntBASIC15.13■□□□□ 0.01
PCDH9Q9HC56 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 AC020910.5-201ENST00000623668 1865 ntBASIC15.13■□□□□ 0.01
PCDH9Q9HC56 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCDH9Q9HC56 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 AC130686.1-201ENST00000622936 2466 ntBASIC15.12■□□□□ 0.01
PCDH9Q9HC56 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 AC023794.5-201ENST00000564380 2157 ntBASIC15.12■□□□□ 0.01
PCDH9Q9HC56 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 GZMB-202ENST00000382540 816 ntTSL 5 BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 CD8B2-202ENST00000417670 633 ntBASIC15.12■□□□□ 0.01
PCDH9Q9HC56 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 KLF2P4-201ENST00000451959 1225 ntBASIC15.12■□□□□ 0.01
PCDH9Q9HC56 ACA64.2-201ENST00000459014 129 ntBASIC15.12■□□□□ 0.01
PCDH9Q9HC56 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 AP000812.2-201ENST00000538934 718 ntBASIC15.12■□□□□ 0.01
PCDH9Q9HC56 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 AC006453.4-201ENST00000636949 1252 ntBASIC15.12■□□□□ 0.01
PCDH9Q9HC56 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 F10-203ENST00000409306 1450 ntTSL 3 BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 FKBP4P6-201ENST00000457486 1332 ntBASIC15.12■□□□□ 0.01
PCDH9Q9HC56 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC15.12■□□□□ 0.01
PCDH9Q9HC56 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
PCDH9Q9HC56 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms