Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
CDH12P55289 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 AC215219.1-201ENST00000400706 1817 ntBASIC13.7□□□□□ -0.22
CDH12P55289 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC13.7□□□□□ -0.22
CDH12P55289 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC13.7□□□□□ -0.22
CDH12P55289 GIMAP3P-201ENST00000495150 836 ntBASIC13.7□□□□□ -0.22
CDH12P55289 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC13.7□□□□□ -0.22
CDH12P55289 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC13.7□□□□□ -0.22
CDH12P55289 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC13.7□□□□□ -0.22
CDH12P55289 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
CDH12P55289 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC13.7□□□□□ -0.22
CDH12P55289 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC13.7□□□□□ -0.22
CDH12P55289 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC13.7□□□□□ -0.22
CDH12P55289 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC13.7□□□□□ -0.22
CDH12P55289 AP005019.2-201ENST00000615104 511 ntBASIC13.7□□□□□ -0.22
CDH12P55289 AL603764.1-201ENST00000636452 321 ntBASIC13.7□□□□□ -0.22
CDH12P55289 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC13.7□□□□□ -0.22
CDH12P55289 AC023794.5-201ENST00000564380 2157 ntBASIC13.7□□□□□ -0.22
CDH12P55289 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.22
CDH12P55289 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC13.7□□□□□ -0.22
CDH12P55289 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC13.7□□□□□ -0.22
CDH12P55289 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
CDH12P55289 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC13.7□□□□□ -0.22
CDH12P55289 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
CDH12P55289 HSPA8P5-201ENST00000456928 2069 ntBASIC13.7□□□□□ -0.22
CDH12P55289 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDH12P55289 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDH12P55289 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDH12P55289 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDH12P55289 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDH12P55289 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDH12P55289 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CDH12P55289 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
CDH12P55289 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC13.69□□□□□ -0.22
CDH12P55289 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDH12P55289 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
CDH12P55289 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CDH12P55289 AC111170.3-201ENST00000624282 2464 ntBASIC13.69□□□□□ -0.22
CDH12P55289 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC13.69□□□□□ -0.22
CDH12P55289 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDH12P55289 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDH12P55289 AC003102.2-201ENST00000589195 1469 ntBASIC13.69□□□□□ -0.22
CDH12P55289 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDH12P55289 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDH12P55289 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDH12P55289 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC13.69□□□□□ -0.22
CDH12P55289 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC13.69□□□□□ -0.22
CDH12P55289 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDH12P55289 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
CDH12P55289 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC13.69□□□□□ -0.22
CDH12P55289 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CDH12P55289 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CDH12P55289 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC13.69□□□□□ -0.22
CDH12P55289 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC13.69□□□□□ -0.22
CDH12P55289 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDH12P55289 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC13.69□□□□□ -0.22
CDH12P55289 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC13.69□□□□□ -0.22
CDH12P55289 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC13.69□□□□□ -0.22
CDH12P55289 ELK1P1-201ENST00000485699 580 ntBASIC13.69□□□□□ -0.22
CDH12P55289 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC13.69□□□□□ -0.22
CDH12P55289 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC13.69□□□□□ -0.22
CDH12P55289 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC13.69□□□□□ -0.22
CDH12P55289 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
CDH12P55289 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC13.69□□□□□ -0.22
CDH12P55289 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC13.69□□□□□ -0.22
CDH12P55289 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDH12P55289 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDH12P55289 PPT1-213ENST00000641319 2388 ntBASIC13.69□□□□□ -0.22
CDH12P55289 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CDH12P55289 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
CDH12P55289 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
CDH12P55289 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms