Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC16.72■□□□□ 0.27
USP28Q96RU2 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
USP28Q96RU2 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
USP28Q96RU2 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC16.72■□□□□ 0.27
USP28Q96RU2 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
USP28Q96RU2 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
USP28Q96RU2 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC16.72■□□□□ 0.27
USP28Q96RU2 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC16.72■□□□□ 0.27
USP28Q96RU2 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
USP28Q96RU2 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
USP28Q96RU2 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
USP28Q96RU2 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
USP28Q96RU2 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC16.72■□□□□ 0.27
USP28Q96RU2 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC16.72■□□□□ 0.27
USP28Q96RU2 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC16.72■□□□□ 0.27
USP28Q96RU2 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC16.72■□□□□ 0.27
USP28Q96RU2 INE1-201ENST00000456273 945 ntBASIC16.72■□□□□ 0.27
USP28Q96RU2 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
USP28Q96RU2 FUZ-207ENST00000526575 482 ntTSL 4 BASIC16.72■□□□□ 0.27
USP28Q96RU2 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC16.72■□□□□ 0.27
USP28Q96RU2 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC16.72■□□□□ 0.27
USP28Q96RU2 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
USP28Q96RU2 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC16.72■□□□□ 0.27
USP28Q96RU2 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
USP28Q96RU2 PIGL-212ENST00000581006 554 ntTSL 4 BASIC16.72■□□□□ 0.27
USP28Q96RU2 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
USP28Q96RU2 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC16.72■□□□□ 0.27
USP28Q96RU2 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
USP28Q96RU2 AC015936.2-201ENST00000593177 259 ntBASIC16.72■□□□□ 0.27
USP28Q96RU2 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC16.72■□□□□ 0.27
USP28Q96RU2 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC16.72■□□□□ 0.27
USP28Q96RU2 AC233724.13-201ENST00000598383 410 ntBASIC16.72■□□□□ 0.27
USP28Q96RU2 AC104506.1-201ENST00000609247 429 ntBASIC16.72■□□□□ 0.27
USP28Q96RU2 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC16.72■□□□□ 0.27
USP28Q96RU2 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
USP28Q96RU2 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
USP28Q96RU2 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
USP28Q96RU2 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
USP28Q96RU2 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
USP28Q96RU2 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC16.72■□□□□ 0.27
USP28Q96RU2 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
USP28Q96RU2 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC16.72■□□□□ 0.27
USP28Q96RU2 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC16.72■□□□□ 0.27
USP28Q96RU2 KCP-203ENST00000610776 5108 ntTSL 5 BASIC16.72■□□□□ 0.27
USP28Q96RU2 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
USP28Q96RU2 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
USP28Q96RU2 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
USP28Q96RU2 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
USP28Q96RU2 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
USP28Q96RU2 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
USP28Q96RU2 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
USP28Q96RU2 AC009093.10-201ENST00000641956 1442 ntBASIC16.71■□□□□ 0.27
USP28Q96RU2 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
USP28Q96RU2 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC16.71■□□□□ 0.27
USP28Q96RU2 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC16.71■□□□□ 0.27
USP28Q96RU2 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC16.71■□□□□ 0.27
USP28Q96RU2 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC16.71■□□□□ 0.27
USP28Q96RU2 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC16.71■□□□□ 0.27
USP28Q96RU2 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
USP28Q96RU2 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
USP28Q96RU2 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
USP28Q96RU2 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
USP28Q96RU2 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC16.71■□□□□ 0.27
USP28Q96RU2 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
USP28Q96RU2 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
USP28Q96RU2 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
USP28Q96RU2 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
USP28Q96RU2 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
USP28Q96RU2 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
USP28Q96RU2 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
USP28Q96RU2 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC16.71■□□□□ 0.27
USP28Q96RU2 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
USP28Q96RU2 CROT-203ENST00000419147 2959 ntTSL 2 BASIC16.71■□□□□ 0.27
USP28Q96RU2 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC16.71■□□□□ 0.27
USP28Q96RU2 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC16.71■□□□□ 0.27
USP28Q96RU2 C2orf27AP3-201ENST00000434123 579 ntBASIC16.71■□□□□ 0.27
USP28Q96RU2 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC16.71■□□□□ 0.27
USP28Q96RU2 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC16.71■□□□□ 0.27
USP28Q96RU2 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC16.71■□□□□ 0.27
USP28Q96RU2 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC16.71■□□□□ 0.27
USP28Q96RU2 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC16.71■□□□□ 0.27
USP28Q96RU2 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC16.71■□□□□ 0.27
USP28Q96RU2 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
USP28Q96RU2 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC16.71■□□□□ 0.27
USP28Q96RU2 AC132938.2-201ENST00000579188 680 ntBASIC16.71■□□□□ 0.27
USP28Q96RU2 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC16.71■□□□□ 0.27
USP28Q96RU2 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC16.71■□□□□ 0.27
USP28Q96RU2 AL354718.3-201ENST00000616414 581 ntBASIC16.71■□□□□ 0.27
USP28Q96RU2 CR382287.1-201ENST00000623954 586 ntBASIC16.71■□□□□ 0.27
USP28Q96RU2 AC006453.4-201ENST00000636949 1252 ntBASIC16.71■□□□□ 0.27
USP28Q96RU2 AL591163.1-201ENST00000641757 987 ntBASIC16.71■□□□□ 0.27
USP28Q96RU2 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC16.71■□□□□ 0.27
USP28Q96RU2 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
USP28Q96RU2 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
USP28Q96RU2 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC16.71■□□□□ 0.27
USP28Q96RU2 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC16.71■□□□□ 0.26
USP28Q96RU2 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
USP28Q96RU2 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
USP28Q96RU2 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
USP28Q96RU2 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms