Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 HCG24-202ENST00000414398 717 ntTSL 3 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 MIR3188-201ENST00000583494 85 ntBASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 AC073352.2-201ENST00000609385 439 ntBASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 LINC01783-202ENST00000614408 828 ntBASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 BX284668.2-205ENST00000619677 828 ntBASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC13.17□□□□□ -0.3
RNFT1Q5M7Z0 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 AHCYP4-201ENST00000419201 1315 ntBASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 MBP-201ENST00000354542 575 ntTSL 2 BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 RNA5SP359-201ENST00000364838 113 ntBASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 NAT9-220ENST00000582870 896 ntTSL 5 BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 AP001542.1-201ENST00000591314 200 ntBASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 AL136379.1-201ENST00000623471 2642 ntBASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC13.16□□□□□ -0.3
RNFT1Q5M7Z0 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNFT1Q5M7Z0 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RNFT1Q5M7Z0 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNFT1Q5M7Z0 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
RNFT1Q5M7Z0 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC13.15□□□□□ -0.3
RNFT1Q5M7Z0 AC092978.1-202ENST00000637590 1327 ntBASIC13.15□□□□□ -0.3
RNFT1Q5M7Z0 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNFT1Q5M7Z0 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC13.15□□□□□ -0.3
RNFT1Q5M7Z0 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC13.15□□□□□ -0.3
RNFT1Q5M7Z0 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RNFT1Q5M7Z0 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNFT1Q5M7Z0 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
RNFT1Q5M7Z0 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
RNFT1Q5M7Z0 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNFT1Q5M7Z0 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC13.15□□□□□ -0.3
RNFT1Q5M7Z0 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNFT1Q5M7Z0 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC13.15□□□□□ -0.3
RNFT1Q5M7Z0 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNFT1Q5M7Z0 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RNFT1Q5M7Z0 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC13.15□□□□□ -0.3
RNFT1Q5M7Z0 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms