Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 LBH-204ENST00000406087 559 ntTSL 4 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 HNRNPA1P28-201ENST00000424481 961 ntBASIC10.78□□□□□ -0.68
SMKR1H3BMG3 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 PRR29-209ENST00000582540 967 ntTSL 2 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 IRF5-214ENST00000613821 595 ntTSL 5 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 AC215219.1-201ENST00000400706 1817 ntBASIC10.78□□□□□ -0.68
SMKR1H3BMG3 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 ADGRG6-202ENST00000296932 6849 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 TMEM121B-202ENST00000399875 3961 ntAPPRIS ALT2 TSL 2 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 LINC00567-201ENST00000569854 3409 ntBASIC10.78□□□□□ -0.68
SMKR1H3BMG3 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 RBM47-201ENST00000295971 4056 ntAPPRIS ALT1 TSL 5 BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
SMKR1H3BMG3 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
SMKR1H3BMG3 AL358334.2-201ENST00000553648 4714 ntTSL 2 BASIC10.77□□□□□ -0.68
SMKR1H3BMG3 INSRR-201ENST00000368195 5101 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
SMKR1H3BMG3 COL1A1-201ENST00000225964 6727 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
SMKR1H3BMG3 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
SMKR1H3BMG3 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC10.77□□□□□ -0.68
SMKR1H3BMG3 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC10.77□□□□□ -0.68
SMKR1H3BMG3 STK25-235ENST00000543554 2556 ntTSL 2 BASIC10.77□□□□□ -0.68
SMKR1H3BMG3 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC10.77□□□□□ -0.68
SMKR1H3BMG3 ASXL1-201ENST00000306058 6591 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.68
SMKR1H3BMG3 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
SMKR1H3BMG3 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
SMKR1H3BMG3 PDE2A-218ENST00000540345 3027 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
SMKR1H3BMG3 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
SMKR1H3BMG3 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.68
SMKR1H3BMG3 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
SMKR1H3BMG3 COBLL1-225ENST00000629362 3868 ntAPPRIS ALT2 TSL 2 BASIC10.77□□□□□ -0.68
SMKR1H3BMG3 AL121827.1-201ENST00000370257 3264 ntTSL 2 BASIC10.77□□□□□ -0.68
SMKR1H3BMG3 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
SMKR1H3BMG3 KCNS2-202ENST00000521839 4340 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 ALDH3A2-201ENST00000176643 3928 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 PRR29-202ENST00000412177 3127 ntAPPRIS P3 TSL 2 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 PLPP6-201ENST00000381883 2944 ntAPPRIS P1 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 AC023274.1-201ENST00000418278 595 ntBASIC10.77□□□□□ -0.69
SMKR1H3BMG3 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 RPL13AP23-201ENST00000480739 586 ntBASIC10.77□□□□□ -0.69
SMKR1H3BMG3 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 AL079307.3-201ENST00000556114 283 ntBASIC10.77□□□□□ -0.69
SMKR1H3BMG3 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 AC026150.2-201ENST00000564693 1156 ntBASIC10.77□□□□□ -0.69
SMKR1H3BMG3 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 TRAK1-210ENST00000613405 4672 ntTSL 2 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 SEZ6L-201ENST00000248933 3248 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 SEZ6L-210ENST00000629590 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
SMKR1H3BMG3 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms