Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC17.58■□□□□ 0.4
CHMP4CQ96CF2 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CHMP4CQ96CF2 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP4CQ96CF2 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP4CQ96CF2 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC17.58■□□□□ 0.4
CHMP4CQ96CF2 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC17.58■□□□□ 0.4
CHMP4CQ96CF2 Z93015.1-201ENST00000451718 390 ntBASIC17.58■□□□□ 0.4
CHMP4CQ96CF2 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP4CQ96CF2 RPSAP36-202ENST00000494591 1261 ntBASIC17.58■□□□□ 0.4
CHMP4CQ96CF2 ZNF767P-206ENST00000513792 565 ntBASIC17.58■□□□□ 0.4
CHMP4CQ96CF2 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CHMP4CQ96CF2 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC17.58■□□□□ 0.4
CHMP4CQ96CF2 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC17.58■□□□□ 0.4
CHMP4CQ96CF2 KLK3-211ENST00000597483 810 ntTSL 2 BASIC17.58■□□□□ 0.4
CHMP4CQ96CF2 AL096828.3-201ENST00000615354 462 ntBASIC17.58■□□□□ 0.4
CHMP4CQ96CF2 AC138466.3-201ENST00000619983 221 ntBASIC17.58■□□□□ 0.4
CHMP4CQ96CF2 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
CHMP4CQ96CF2 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP4CQ96CF2 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CHMP4CQ96CF2 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
CHMP4CQ96CF2 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CHMP4CQ96CF2 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP4CQ96CF2 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP4CQ96CF2 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP4CQ96CF2 ANKRD30BP2-201ENST00000435744 1610 ntBASIC17.58■□□□□ 0.4
CHMP4CQ96CF2 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 AC011840.2-201ENST00000563063 1520 ntBASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 AGGF1P1-201ENST00000509500 2073 ntBASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 AL354702.1-201ENST00000442006 1960 ntBASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 MTX1P1-201ENST00000440904 838 ntBASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 AC022447.6-201ENST00000515522 438 ntBASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 FAM8A2P-201ENST00000528813 1142 ntBASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 AC106820.3-201ENST00000561653 397 ntBASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 AC023908.3-201ENST00000564211 3047 ntBASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP4CQ96CF2 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 BTBD6P1-201ENST00000412176 1267 ntBASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 AC104982.3-201ENST00000581995 514 ntBASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 AC005695.3-201ENST00000614522 232 ntBASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CHMP4CQ96CF2 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms