Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC8.7□□□□□ -1.02
HSPG2P98160 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
HSPG2P98160 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
HSPG2P98160 RECQL5-218ENST00000584999 1922 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
HSPG2P98160 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC8.7□□□□□ -1.02
HSPG2P98160 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
HSPG2P98160 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
HSPG2P98160 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
HSPG2P98160 PSMA7-202ENST00000370861 773 ntTSL 5 BASIC8.7□□□□□ -1.02
HSPG2P98160 IGHV3-11-201ENST00000390601 473 ntAPPRIS P1 BASIC8.7□□□□□ -1.02
HSPG2P98160 NME2-201ENST00000393183 568 ntTSL 2 BASIC8.7□□□□□ -1.02
HSPG2P98160 IL18BP-206ENST00000393707 1037 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
HSPG2P98160 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
HSPG2P98160 LINC02036-201ENST00000415869 910 ntTSL 3 BASIC8.7□□□□□ -1.02
HSPG2P98160 TRBV11-2-201ENST00000471935 408 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
HSPG2P98160 AF186996.6-201ENST00000485294 149 ntBASIC8.7□□□□□ -1.02
HSPG2P98160 HNRNPA1P72-201ENST00000529511 967 ntBASIC8.7□□□□□ -1.02
HSPG2P98160 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC8.7□□□□□ -1.02
HSPG2P98160 MT3-202ENST00000561640 514 ntTSL 3 BASIC8.7□□□□□ -1.02
HSPG2P98160 COMMD10-201ENST00000274458 1469 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
HSPG2P98160 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC8.7□□□□□ -1.02
HSPG2P98160 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
HSPG2P98160 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
HSPG2P98160 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
HSPG2P98160 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC8.69□□□□□ -1.02
HSPG2P98160 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC8.69□□□□□ -1.02
HSPG2P98160 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC8.69□□□□□ -1.02
HSPG2P98160 RCL1-206ENST00000442869 1644 ntTSL 3 BASIC8.69□□□□□ -1.02
HSPG2P98160 TBC1D27-202ENST00000424239 1573 ntBASIC8.69□□□□□ -1.02
HSPG2P98160 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC8.69□□□□□ -1.02
HSPG2P98160 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC8.69□□□□□ -1.02
HSPG2P98160 PSMC3IP-201ENST00000253789 1408 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
HSPG2P98160 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
HSPG2P98160 OR51B5-201ENST00000300773 939 ntAPPRIS P1 BASIC8.69□□□□□ -1.02
HSPG2P98160 METTL7AP1-201ENST00000547343 496 ntBASIC8.69□□□□□ -1.02
HSPG2P98160 AC007728.1-202ENST00000564510 787 ntTSL 3 BASIC8.69□□□□□ -1.02
HSPG2P98160 OSGIN1-206ENST00000565123 833 ntTSL 2 BASIC8.69□□□□□ -1.02
HSPG2P98160 TUBB4A-207ENST00000596926 548 ntTSL 4 BASIC8.69□□□□□ -1.02
HSPG2P98160 AC104506.1-201ENST00000609247 429 ntBASIC8.69□□□□□ -1.02
HSPG2P98160 COG6-212ENST00000630730 186 ntTSL 5 BASIC8.69□□□□□ -1.02
HSPG2P98160 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC8.69□□□□□ -1.02
HSPG2P98160 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
HSPG2P98160 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC8.69□□□□□ -1.02
HSPG2P98160 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC8.69□□□□□ -1.02
HSPG2P98160 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC8.69□□□□□ -1.02
HSPG2P98160 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC8.69□□□□□ -1.02
HSPG2P98160 CREB5-202ENST00000396298 2001 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
HSPG2P98160 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC8.69□□□□□ -1.02
HSPG2P98160 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC8.69□□□□□ -1.02
HSPG2P98160 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC8.69□□□□□ -1.02
HSPG2P98160 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC8.69□□□□□ -1.02
HSPG2P98160 GTF2A1L-201ENST00000403751 1639 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
HSPG2P98160 LYRM4-205ENST00000464010 1401 ntTSL 3 BASIC8.69□□□□□ -1.02
HSPG2P98160 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC8.69□□□□□ -1.02
HSPG2P98160 OAZ3-201ENST00000321531 851 ntTSL 5 BASIC8.69□□□□□ -1.02
HSPG2P98160 TUBB2BP1-201ENST00000404155 871 ntBASIC8.69□□□□□ -1.02
HSPG2P98160 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
HSPG2P98160 AC005921.2-201ENST00000574246 670 ntTSL 5 BASIC8.69□□□□□ -1.02
HSPG2P98160 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
HSPG2P98160 AL645940.1-201ENST00000606432 594 ntTSL 2 BASIC8.69□□□□□ -1.02
HSPG2P98160 MIR6871-201ENST00000613433 56 ntBASIC8.69□□□□□ -1.02
HSPG2P98160 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC8.69□□□□□ -1.02
HSPG2P98160 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
HSPG2P98160 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
HSPG2P98160 RAPGEFL1-202ENST00000456989 1582 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
HSPG2P98160 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC8.69□□□□□ -1.02
HSPG2P98160 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC8.69□□□□□ -1.02
HSPG2P98160 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
HSPG2P98160 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
HSPG2P98160 FAM157C-201ENST00000563357 1806 ntTSL 2 BASIC8.69□□□□□ -1.02
HSPG2P98160 ASS1P1-201ENST00000402854 1237 ntBASIC8.69□□□□□ -1.02
HSPG2P98160 ZNF32-AS2-201ENST00000418966 905 ntTSL 5 BASIC8.69□□□□□ -1.02
HSPG2P98160 AC010997.2-201ENST00000427610 260 ntTSL 3 BASIC8.69□□□□□ -1.02
HSPG2P98160 AC091132.6-201ENST00000586411 826 ntTSL 5 BASIC8.69□□□□□ -1.02
HSPG2P98160 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC8.69□□□□□ -1.02
HSPG2P98160 CDIPT-AS1-203ENST00000638164 713 ntBASIC8.69□□□□□ -1.02
HSPG2P98160 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC8.69□□□□□ -1.02
HSPG2P98160 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC8.69□□□□□ -1.02
HSPG2P98160 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC8.69□□□□□ -1.02
HSPG2P98160 GLDC-216ENST00000639639 1559 ntTSL 3 BASIC8.69□□□□□ -1.02
HSPG2P98160 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC8.69□□□□□ -1.02
HSPG2P98160 GAPDHS-201ENST00000222286 1489 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
HSPG2P98160 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
HSPG2P98160 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC8.69□□□□□ -1.02
HSPG2P98160 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
HSPG2P98160 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC8.69□□□□□ -1.02
HSPG2P98160 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC8.69□□□□□ -1.02
HSPG2P98160 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
HSPG2P98160 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC8.69□□□□□ -1.02
HSPG2P98160 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.02
HSPG2P98160 CELP-203ENST00000624767 2414 ntTSL 5 BASIC8.68□□□□□ -1.02
HSPG2P98160 RXRG-201ENST00000359842 2041 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
HSPG2P98160 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC8.68□□□□□ -1.02
HSPG2P98160 HAX1-201ENST00000328703 1227 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
HSPG2P98160 NR2C2AP-201ENST00000331552 1293 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
HSPG2P98160 FAM25E-201ENST00000411791 322 ntTSL 3 BASIC8.68□□□□□ -1.02
HSPG2P98160 NR2C2AP-202ENST00000420605 859 ntTSL 2 BASIC8.68□□□□□ -1.02
HSPG2P98160 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC8.68□□□□□ -1.02
HSPG2P98160 TMEM154-202ENST00000504064 878 ntAPPRIS ALT2 TSL 1 (best) BASIC8.68□□□□□ -1.02
HSPG2P98160 AACSP1-202ENST00000521412 1095 ntBASIC8.68□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms