Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHMP2AO43633 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHMP2AO43633 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHMP2AO43633 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC16.52■□□□□ 0.24
CHMP2AO43633 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHMP2AO43633 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC16.52■□□□□ 0.24
CHMP2AO43633 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC16.52■□□□□ 0.24
CHMP2AO43633 AC104073.2-201ENST00000453737 312 ntBASIC16.52■□□□□ 0.24
CHMP2AO43633 KRT8P13-201ENST00000463294 1010 ntBASIC16.52■□□□□ 0.24
CHMP2AO43633 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC16.52■□□□□ 0.24
CHMP2AO43633 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CHMP2AO43633 AC005740.2-201ENST00000511085 419 ntBASIC16.52■□□□□ 0.24
CHMP2AO43633 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC16.52■□□□□ 0.24
CHMP2AO43633 AC103988.2-201ENST00000561804 725 ntBASIC16.52■□□□□ 0.24
CHMP2AO43633 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC16.52■□□□□ 0.24
CHMP2AO43633 RPL35-206ENST00000629845 340 ntTSL 5 BASIC16.52■□□□□ 0.24
CHMP2AO43633 Z98259.2-201ENST00000641583 609 ntBASIC16.52■□□□□ 0.24
CHMP2AO43633 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CHMP2AO43633 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHMP2AO43633 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CHMP2AO43633 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CHMP2AO43633 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC16.52■□□□□ 0.23
CHMP2AO43633 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC16.52■□□□□ 0.23
CHMP2AO43633 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
CHMP2AO43633 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CHMP2AO43633 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC16.52■□□□□ 0.23
CHMP2AO43633 AC097359.2-201ENST00000604992 2389 ntBASIC16.52■□□□□ 0.23
CHMP2AO43633 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
CHMP2AO43633 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
CHMP2AO43633 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC16.52■□□□□ 0.23
CHMP2AO43633 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.23
CHMP2AO43633 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CHMP2AO43633 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CHMP2AO43633 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC16.52■□□□□ 0.23
CHMP2AO43633 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CHMP2AO43633 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC16.52■□□□□ 0.23
CHMP2AO43633 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
CHMP2AO43633 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC16.51■□□□□ 0.23
CHMP2AO43633 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CHMP2AO43633 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC16.51■□□□□ 0.23
CHMP2AO43633 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC16.51■□□□□ 0.23
CHMP2AO43633 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP2AO43633 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP2AO43633 AC136759.1-202ENST00000530858 2194 ntBASIC16.51■□□□□ 0.23
CHMP2AO43633 LINC00552-201ENST00000625151 2579 ntBASIC16.51■□□□□ 0.23
CHMP2AO43633 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC16.51■□□□□ 0.23
CHMP2AO43633 FAS-202ENST00000352159 1722 ntTSL 5 BASIC16.51■□□□□ 0.23
CHMP2AO43633 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CHMP2AO43633 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP2AO43633 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC16.51■□□□□ 0.23
CHMP2AO43633 AC140479.7-201ENST00000636301 2332 ntBASIC16.51■□□□□ 0.23
CHMP2AO43633 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP2AO43633 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
CHMP2AO43633 KCP-203ENST00000610776 5108 ntTSL 5 BASIC16.51■□□□□ 0.23
CHMP2AO43633 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP2AO43633 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CHMP2AO43633 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP2AO43633 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CHMP2AO43633 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP2AO43633 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP2AO43633 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP2AO43633 AGER-203ENST00000375065 665 ntTSL 2 BASIC16.51■□□□□ 0.23
CHMP2AO43633 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC16.51■□□□□ 0.23
CHMP2AO43633 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC16.51■□□□□ 0.23
CHMP2AO43633 PTPA-215ENST00000432124 567 ntTSL 4 BASIC16.51■□□□□ 0.23
CHMP2AO43633 AL645933.1-201ENST00000440087 609 ntBASIC16.51■□□□□ 0.23
CHMP2AO43633 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP2AO43633 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC16.51■□□□□ 0.23
CHMP2AO43633 AC106794.1-201ENST00000506935 792 ntBASIC16.51■□□□□ 0.23
CHMP2AO43633 AC022447.6-201ENST00000515522 438 ntBASIC16.51■□□□□ 0.23
CHMP2AO43633 NOP2-211ENST00000540228 668 ntTSL 2 BASIC16.51■□□□□ 0.23
CHMP2AO43633 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP2AO43633 AC020914.3-201ENST00000594712 304 ntBASIC16.51■□□□□ 0.23
CHMP2AO43633 AC004923.1-202ENST00000642106 209 ntBASIC16.51■□□□□ 0.23
CHMP2AO43633 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP2AO43633 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC16.51■□□□□ 0.23
CHMP2AO43633 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
CHMP2AO43633 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP2AO43633 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC16.51■□□□□ 0.23
CHMP2AO43633 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP2AO43633 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
CHMP2AO43633 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.51■□□□□ 0.23
CHMP2AO43633 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP2AO43633 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC16.51■□□□□ 0.23
CHMP2AO43633 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHMP2AO43633 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC16.51■□□□□ 0.23
CHMP2AO43633 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP2AO43633 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CHMP2AO43633 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP2AO43633 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP2AO43633 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP2AO43633 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP2AO43633 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC16.5■□□□□ 0.23
CHMP2AO43633 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP2AO43633 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC16.5■□□□□ 0.23
CHMP2AO43633 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC16.5■□□□□ 0.23
CHMP2AO43633 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP2AO43633 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP2AO43633 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CHMP2AO43633 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms