Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 AL391280.1-201ENST00000506969 1062 ntBASIC14.2□□□□□ -0.14
COL28A1Q2UY09 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 EIF5AP2-201ENST00000585668 1047 ntBASIC14.2□□□□□ -0.14
COL28A1Q2UY09 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 AC090164.2-201ENST00000611487 516 ntBASIC14.2□□□□□ -0.14
COL28A1Q2UY09 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 AL161773.1-201ENST00000624845 863 ntBASIC14.2□□□□□ -0.14
COL28A1Q2UY09 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
COL28A1Q2UY09 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 C18orf15-201ENST00000623680 2534 ntBASIC14.19□□□□□ -0.14
COL28A1Q2UY09 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 AC139749.1-202ENST00000617529 3139 ntBASIC14.19□□□□□ -0.14
COL28A1Q2UY09 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 RPL5P21-201ENST00000404620 815 ntBASIC14.19□□□□□ -0.14
COL28A1Q2UY09 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 AGPAT5P1-201ENST00000455855 1019 ntBASIC14.19□□□□□ -0.14
COL28A1Q2UY09 AC018463.1-201ENST00000456674 917 ntBASIC14.19□□□□□ -0.14
COL28A1Q2UY09 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 FOS-204ENST00000554617 796 ntTSL 2 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 AC007881.3-201ENST00000608897 607 ntBASIC14.19□□□□□ -0.14
COL28A1Q2UY09 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 CICP24-201ENST00000605464 2705 ntBASIC14.19□□□□□ -0.14
COL28A1Q2UY09 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.19□□□□□ -0.14
COL28A1Q2UY09 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL28A1Q2UY09 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms