Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NPHP4O75161 GOLGA2P8-201ENST00000505201 779 ntBASIC20.02■□□□□ 0.8
NPHP4O75161 ISL1-203ENST00000511384 981 ntTSL 5 BASIC20.02■□□□□ 0.8
NPHP4O75161 RN7SL440P-201ENST00000577855 343 ntBASIC20.02■□□□□ 0.8
NPHP4O75161 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC20.02■□□□□ 0.8
NPHP4O75161 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC20.02■□□□□ 0.8
NPHP4O75161 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
NPHP4O75161 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
NPHP4O75161 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC20.02■□□□□ 0.8
NPHP4O75161 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NPHP4O75161 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC20.02■□□□□ 0.8
NPHP4O75161 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC20.02■□□□□ 0.8
NPHP4O75161 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
NPHP4O75161 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
NPHP4O75161 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC20.02■□□□□ 0.8
NPHP4O75161 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC20.02■□□□□ 0.8
NPHP4O75161 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
NPHP4O75161 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
NPHP4O75161 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
NPHP4O75161 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
NPHP4O75161 TBC1D27-202ENST00000424239 1573 ntBASIC20.02■□□□□ 0.8
NPHP4O75161 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC20.02■□□□□ 0.8
NPHP4O75161 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC20.02■□□□□ 0.8
NPHP4O75161 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
NPHP4O75161 PRAL-201ENST00000624952 3286 ntBASIC20.02■□□□□ 0.8
NPHP4O75161 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
NPHP4O75161 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
NPHP4O75161 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
NPHP4O75161 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC20.02■□□□□ 0.79
NPHP4O75161 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.79
NPHP4O75161 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
NPHP4O75161 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC20.02■□□□□ 0.79
NPHP4O75161 DPY19L2P4-201ENST00000479881 442 ntBASIC20.02■□□□□ 0.79
NPHP4O75161 RPSAP70-201ENST00000504462 864 ntBASIC20.02■□□□□ 0.79
NPHP4O75161 AP001462.1-201ENST00000594089 452 ntBASIC20.02■□□□□ 0.79
NPHP4O75161 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC20.02■□□□□ 0.79
NPHP4O75161 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC20.02■□□□□ 0.79
NPHP4O75161 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
NPHP4O75161 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP4O75161 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC20.01■□□□□ 0.79
NPHP4O75161 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP4O75161 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP4O75161 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP4O75161 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
NPHP4O75161 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP4O75161 LILRP2-202ENST00000413572 1383 ntBASIC20.01■□□□□ 0.79
NPHP4O75161 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP4O75161 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
NPHP4O75161 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP4O75161 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP4O75161 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
NPHP4O75161 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP4O75161 MRPS28-201ENST00000276585 850 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP4O75161 SPATS1-202ENST00000323108 1107 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
NPHP4O75161 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP4O75161 GH1-203ENST00000351388 685 ntTSL 2 BASIC20.01■□□□□ 0.79
NPHP4O75161 HDGF-202ENST00000368206 960 ntTSL 5 BASIC20.01■□□□□ 0.79
NPHP4O75161 AL359649.1-202ENST00000375713 443 ntTSL 5 BASIC20.01■□□□□ 0.79
NPHP4O75161 U73169.1-201ENST00000395152 367 ntBASIC20.01■□□□□ 0.79
NPHP4O75161 Z82185.1-201ENST00000417792 549 ntTSL 4 BASIC20.01■□□□□ 0.79
NPHP4O75161 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC20.01■□□□□ 0.79
NPHP4O75161 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC20.01■□□□□ 0.79
NPHP4O75161 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC20.01■□□□□ 0.79
NPHP4O75161 AL031587.2-201ENST00000445483 414 ntTSL 5 BASIC20.01■□□□□ 0.79
NPHP4O75161 AL136084.1-201ENST00000449172 318 ntBASIC20.01■□□□□ 0.79
NPHP4O75161 RN7SL523P-201ENST00000484401 298 ntBASIC20.01■□□□□ 0.79
NPHP4O75161 LAMTOR1-208ENST00000545249 965 ntTSL 3 BASIC20.01■□□□□ 0.79
NPHP4O75161 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC20.01■□□□□ 0.79
NPHP4O75161 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC20.01■□□□□ 0.79
NPHP4O75161 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC20.01■□□□□ 0.79
NPHP4O75161 AP001043.1-206ENST00000613045 730 ntTSL 5 BASIC20.01■□□□□ 0.79
NPHP4O75161 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP4O75161 ACE-204ENST00000428043 5120 ntTSL 2 BASIC20■□□□□ 0.79
NPHP4O75161 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
NPHP4O75161 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP4O75161 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC20■□□□□ 0.79
NPHP4O75161 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
NPHP4O75161 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP4O75161 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP4O75161 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
NPHP4O75161 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
NPHP4O75161 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP4O75161 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC20■□□□□ 0.79
NPHP4O75161 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP4O75161 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP4O75161 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP4O75161 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC20■□□□□ 0.79
NPHP4O75161 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC20■□□□□ 0.79
NPHP4O75161 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
NPHP4O75161 AP001615.1-201ENST00000423276 461 ntTSL 3 BASIC20■□□□□ 0.79
NPHP4O75161 KRT19P4-201ENST00000443208 943 ntBASIC20■□□□□ 0.79
NPHP4O75161 HNRNPA1P10-201ENST00000444945 962 ntBASIC20■□□□□ 0.79
NPHP4O75161 AC092295.1-201ENST00000446262 434 ntTSL 3 BASIC20■□□□□ 0.79
NPHP4O75161 IP6K2-223ENST00000453202 571 ntTSL 4 BASIC20■□□□□ 0.79
NPHP4O75161 AC008494.1-201ENST00000497612 796 ntBASIC20■□□□□ 0.79
NPHP4O75161 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC20■□□□□ 0.79
NPHP4O75161 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC20■□□□□ 0.79
NPHP4O75161 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC20■□□□□ 0.79
NPHP4O75161 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP4O75161 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms