Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AC093827.2-201ENST00000512654 315 ntBASIC24.39■■□□□ 1.49
CDX2Q99626 ARL16-209ENST00000573715 763 ntTSL 3 BASIC24.39■■□□□ 1.49
CDX2Q99626 ARL16-211ENST00000576135 694 ntTSL 3 BASIC24.39■■□□□ 1.49
CDX2Q99626 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
CDX2Q99626 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC24.38■■□□□ 1.49
CDX2Q99626 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC24.38■■□□□ 1.49
CDX2Q99626 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC24.38■■□□□ 1.49
CDX2Q99626 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CDX2Q99626 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
CDX2Q99626 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
CDX2Q99626 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC24.37■■□□□ 1.49
CDX2Q99626 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
CDX2Q99626 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
CDX2Q99626 PARP1-210ENST00000629232 477 ntTSL 5 BASIC24.37■■□□□ 1.49
CDX2Q99626 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
CDX2Q99626 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC24.37■■□□□ 1.49
CDX2Q99626 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
CDX2Q99626 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC24.36■■□□□ 1.49
CDX2Q99626 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
CDX2Q99626 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
CDX2Q99626 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC24.36■■□□□ 1.49
CDX2Q99626 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
CDX2Q99626 APTR-205ENST00000447009 902 ntTSL 2 BASIC24.36■■□□□ 1.49
CDX2Q99626 DET1-205ENST00000558413 583 ntTSL 4 BASIC24.36■■□□□ 1.49
CDX2Q99626 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
CDX2Q99626 AP004609.3-201ENST00000610705 1884 ntBASIC24.36■■□□□ 1.49
CDX2Q99626 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC24.35■■□□□ 1.49
CDX2Q99626 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CDX2Q99626 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC24.35■■□□□ 1.49
CDX2Q99626 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CDX2Q99626 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CDX2Q99626 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC24.35■■□□□ 1.49
CDX2Q99626 KRT18P61-201ENST00000585825 1298 ntBASIC24.35■■□□□ 1.49
CDX2Q99626 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
CDX2Q99626 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC24.35■■□□□ 1.49
CDX2Q99626 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
CDX2Q99626 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
CDX2Q99626 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CDX2Q99626 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CDX2Q99626 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC24.34■■□□□ 1.49
CDX2Q99626 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC24.33■■□□□ 1.49
CDX2Q99626 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CDX2Q99626 pRNA.6-201ENST00000610482 90 ntBASIC24.33■■□□□ 1.49
CDX2Q99626 pRNA.5-201ENST00000612139 90 ntBASIC24.33■■□□□ 1.49
CDX2Q99626 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
CDX2Q99626 pRNA.11-201ENST00000618423 90 ntBASIC24.33■■□□□ 1.49
CDX2Q99626 pRNA.13-201ENST00000619112 90 ntBASIC24.33■■□□□ 1.49
CDX2Q99626 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC24.33■■□□□ 1.49
CDX2Q99626 HSCB-202ENST00000398941 955 ntTSL 2 BASIC24.32■■□□□ 1.48
CDX2Q99626 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CDX2Q99626 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CDX2Q99626 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC24.32■■□□□ 1.48
CDX2Q99626 BID-214ENST00000617586 542 ntTSL 5 BASIC24.32■■□□□ 1.48
CDX2Q99626 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CDX2Q99626 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
CDX2Q99626 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC24.31■■□□□ 1.48
CDX2Q99626 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC24.31■■□□□ 1.48
CDX2Q99626 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC24.31■■□□□ 1.48
CDX2Q99626 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CDX2Q99626 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CDX2Q99626 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC24.31■■□□□ 1.48
CDX2Q99626 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC24.31■■□□□ 1.48
CDX2Q99626 WT1-AS_3.1-201ENST00000613262 234 ntBASIC24.31■■□□□ 1.48
CDX2Q99626 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
CDX2Q99626 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CDX2Q99626 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CDX2Q99626 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
CDX2Q99626 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CDX2Q99626 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CDX2Q99626 STX7-201ENST00000367937 1090 ntTSL 5 BASIC24.3■■□□□ 1.48
CDX2Q99626 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
CDX2Q99626 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
CDX2Q99626 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
CDX2Q99626 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CDX2Q99626 GPX1P1-201ENST00000388829 606 ntBASIC24.29■■□□□ 1.48
CDX2Q99626 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
CDX2Q99626 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC24.29■■□□□ 1.48
CDX2Q99626 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC24.29■■□□□ 1.48
CDX2Q99626 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC24.29■■□□□ 1.48
CDX2Q99626 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC24.28■■□□□ 1.48
CDX2Q99626 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC24.28■■□□□ 1.48
CDX2Q99626 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CDX2Q99626 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC24.28■■□□□ 1.48
CDX2Q99626 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC24.28■■□□□ 1.48
CDX2Q99626 AP005435.1-201ENST00000529293 1178 ntBASIC24.28■■□□□ 1.48
CDX2Q99626 DBI-210ENST00000542275 757 ntTSL 5 BASIC24.28■■□□□ 1.48
CDX2Q99626 LINC01003-201ENST00000564834 1764 ntBASIC24.28■■□□□ 1.48
CDX2Q99626 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC24.28■■□□□ 1.48
CDX2Q99626 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC24.28■■□□□ 1.48
CDX2Q99626 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CDX2Q99626 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC24.27■■□□□ 1.48
CDX2Q99626 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
CDX2Q99626 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC24.27■■□□□ 1.48
CDX2Q99626 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
CDX2Q99626 KRT18P6-201ENST00000555540 1265 ntBASIC24.27■■□□□ 1.48
CDX2Q99626 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC24.27■■□□□ 1.48
CDX2Q99626 GALNS-213ENST00000569433 723 ntTSL 3 BASIC24.27■■□□□ 1.48
CDX2Q99626 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CDX2Q99626 VGF-203ENST00000611537 1622 ntTSL 5 BASIC24.27■■□□□ 1.48
CDX2Q99626 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms