Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.57■□□□□ 0.72
USF3Q68DE3 SRD5A1P1-201ENST00000442297 786 ntBASIC19.56■□□□□ 0.72
USF3Q68DE3 AC087623.3-201ENST00000607047 1098 ntBASIC19.56■□□□□ 0.72
USF3Q68DE3 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
USF3Q68DE3 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC19.56■□□□□ 0.72
USF3Q68DE3 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
USF3Q68DE3 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
USF3Q68DE3 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
USF3Q68DE3 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
USF3Q68DE3 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.56■□□□□ 0.72
USF3Q68DE3 GRAMD4P4-201ENST00000613563 1115 ntBASIC19.56■□□□□ 0.72
USF3Q68DE3 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
USF3Q68DE3 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC19.56■□□□□ 0.72
USF3Q68DE3 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USF3Q68DE3 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC19.55■□□□□ 0.72
USF3Q68DE3 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC19.55■□□□□ 0.72
USF3Q68DE3 MIR5787-201ENST00000611784 55 ntBASIC19.55■□□□□ 0.72
USF3Q68DE3 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USF3Q68DE3 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
USF3Q68DE3 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
USF3Q68DE3 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC19.54■□□□□ 0.72
USF3Q68DE3 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
USF3Q68DE3 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
USF3Q68DE3 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USF3Q68DE3 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC19.54■□□□□ 0.72
USF3Q68DE3 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USF3Q68DE3 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USF3Q68DE3 AC092666.2-201ENST00000613287 246 ntBASIC19.54■□□□□ 0.72
USF3Q68DE3 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC19.54■□□□□ 0.72
USF3Q68DE3 AC138932.3-201ENST00000567634 1902 ntBASIC19.54■□□□□ 0.72
USF3Q68DE3 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
USF3Q68DE3 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USF3Q68DE3 MIR939-201ENST00000401314 82 ntBASIC19.53■□□□□ 0.72
USF3Q68DE3 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.53■□□□□ 0.72
USF3Q68DE3 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
USF3Q68DE3 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC19.53■□□□□ 0.72
USF3Q68DE3 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC19.53■□□□□ 0.72
USF3Q68DE3 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC19.53■□□□□ 0.72
USF3Q68DE3 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
USF3Q68DE3 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
USF3Q68DE3 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USF3Q68DE3 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
USF3Q68DE3 SERBP1P1-201ENST00000396021 1160 ntBASIC19.53■□□□□ 0.72
USF3Q68DE3 DUX4L19-201ENST00000557448 1267 ntBASIC19.53■□□□□ 0.72
USF3Q68DE3 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC19.53■□□□□ 0.72
USF3Q68DE3 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC19.53■□□□□ 0.72
USF3Q68DE3 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USF3Q68DE3 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USF3Q68DE3 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.52■□□□□ 0.72
USF3Q68DE3 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
USF3Q68DE3 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC19.52■□□□□ 0.72
USF3Q68DE3 AL136967.2-201ENST00000623968 743 ntBASIC19.52■□□□□ 0.72
USF3Q68DE3 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
USF3Q68DE3 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
USF3Q68DE3 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC19.52■□□□□ 0.72
USF3Q68DE3 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
USF3Q68DE3 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.71
USF3Q68DE3 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
USF3Q68DE3 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USF3Q68DE3 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USF3Q68DE3 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
USF3Q68DE3 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
USF3Q68DE3 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC19.51■□□□□ 0.71
USF3Q68DE3 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
USF3Q68DE3 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC19.51■□□□□ 0.71
USF3Q68DE3 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.51■□□□□ 0.71
USF3Q68DE3 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC19.51■□□□□ 0.71
USF3Q68DE3 AC131274.2-201ENST00000580697 1507 ntBASIC19.51■□□□□ 0.71
USF3Q68DE3 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USF3Q68DE3 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USF3Q68DE3 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
USF3Q68DE3 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USF3Q68DE3 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USF3Q68DE3 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
USF3Q68DE3 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
USF3Q68DE3 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USF3Q68DE3 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USF3Q68DE3 AC104564.3-201ENST00000582367 638 ntBASIC19.5■□□□□ 0.71
USF3Q68DE3 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USF3Q68DE3 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USF3Q68DE3 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.49■□□□□ 0.71
USF3Q68DE3 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
USF3Q68DE3 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USF3Q68DE3 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC19.49■□□□□ 0.71
USF3Q68DE3 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USF3Q68DE3 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC19.49■□□□□ 0.71
USF3Q68DE3 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
USF3Q68DE3 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USF3Q68DE3 RASA4CP-201ENST00000424092 1398 ntBASIC19.48■□□□□ 0.71
USF3Q68DE3 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC19.48■□□□□ 0.71
USF3Q68DE3 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
USF3Q68DE3 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USF3Q68DE3 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USF3Q68DE3 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USF3Q68DE3 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC19.48■□□□□ 0.71
USF3Q68DE3 AC009102.2-201ENST00000606772 1639 ntBASIC19.48■□□□□ 0.71
USF3Q68DE3 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USF3Q68DE3 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC19.48■□□□□ 0.71
USF3Q68DE3 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
USF3Q68DE3 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms