Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC093827.2-201ENST00000512654 315 ntBASIC14.43□□□□□ -0.1
HSPG2P98160 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HSPG2P98160 NCF1B-203ENST00000435988 1254 ntBASIC14.43□□□□□ -0.1
HSPG2P98160 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC14.43□□□□□ -0.1
HSPG2P98160 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HSPG2P98160 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC14.42□□□□□ -0.1
HSPG2P98160 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC14.42□□□□□ -0.1
HSPG2P98160 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC14.42□□□□□ -0.1
HSPG2P98160 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HSPG2P98160 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HSPG2P98160 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HSPG2P98160 AP005435.1-201ENST00000529293 1178 ntBASIC14.42□□□□□ -0.1
HSPG2P98160 AC131274.2-201ENST00000580697 1507 ntBASIC14.41□□□□□ -0.1
HSPG2P98160 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
HSPG2P98160 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HSPG2P98160 AC245100.8-202ENST00000629247 1058 ntBASIC14.41□□□□□ -0.1
HSPG2P98160 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HSPG2P98160 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HSPG2P98160 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
HSPG2P98160 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HSPG2P98160 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
HSPG2P98160 AC026185.1-201ENST00000445748 174 ntBASIC14.41□□□□□ -0.1
HSPG2P98160 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
HSPG2P98160 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HSPG2P98160 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
HSPG2P98160 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC14.4□□□□□ -0.1
HSPG2P98160 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC14.4□□□□□ -0.1
HSPG2P98160 AC142472.1-201ENST00000612013 1741 ntBASIC14.4□□□□□ -0.1
HSPG2P98160 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC14.4□□□□□ -0.1
HSPG2P98160 DET1-205ENST00000558413 583 ntTSL 4 BASIC14.4□□□□□ -0.1
HSPG2P98160 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HSPG2P98160 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC14.4□□□□□ -0.1
HSPG2P98160 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HSPG2P98160 PARP1-210ENST00000629232 477 ntTSL 5 BASIC14.39□□□□□ -0.11
HSPG2P98160 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HSPG2P98160 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HSPG2P98160 HSCB-202ENST00000398941 955 ntTSL 2 BASIC14.39□□□□□ -0.11
HSPG2P98160 AC241377.3-202ENST00000626088 1088 ntBASIC14.39□□□□□ -0.11
HSPG2P98160 AC241585.3-202ENST00000628937 1088 ntBASIC14.39□□□□□ -0.11
HSPG2P98160 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
HSPG2P98160 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HSPG2P98160 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC14.39□□□□□ -0.11
HSPG2P98160 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HSPG2P98160 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
HSPG2P98160 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
HSPG2P98160 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HSPG2P98160 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HSPG2P98160 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HSPG2P98160 WT1-AS_3.1-201ENST00000613262 234 ntBASIC14.38□□□□□ -0.11
HSPG2P98160 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HSPG2P98160 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HSPG2P98160 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC14.38□□□□□ -0.11
HSPG2P98160 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
HSPG2P98160 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HSPG2P98160 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC14.38□□□□□ -0.11
HSPG2P98160 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HSPG2P98160 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC14.38□□□□□ -0.11
HSPG2P98160 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HSPG2P98160 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC14.38□□□□□ -0.11
HSPG2P98160 NT5C3AP1-201ENST00000394500 1012 ntBASIC14.38□□□□□ -0.11
HSPG2P98160 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HSPG2P98160 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC14.38□□□□□ -0.11
HSPG2P98160 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HSPG2P98160 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC14.38□□□□□ -0.11
HSPG2P98160 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HSPG2P98160 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC14.38□□□□□ -0.11
HSPG2P98160 AC092171.4-201ENST00000609130 632 ntBASIC14.38□□□□□ -0.11
HSPG2P98160 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC14.37□□□□□ -0.11
HSPG2P98160 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
HSPG2P98160 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
HSPG2P98160 GTSE1-AS1-202ENST00000623117 1518 ntBASIC14.37□□□□□ -0.11
HSPG2P98160 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
HSPG2P98160 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC14.37□□□□□ -0.11
HSPG2P98160 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC14.37□□□□□ -0.11
HSPG2P98160 CD99P1-205ENST00000527459 561 ntBASIC14.37□□□□□ -0.11
HSPG2P98160 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC14.37□□□□□ -0.11
HSPG2P98160 MIR572-201ENST00000384983 95 ntBASIC14.37□□□□□ -0.11
HSPG2P98160 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
HSPG2P98160 AL138781.1-201ENST00000566567 1274 ntBASIC14.37□□□□□ -0.11
HSPG2P98160 AC142086.2-201ENST00000569753 217 ntBASIC14.37□□□□□ -0.11
HSPG2P98160 ARL16-209ENST00000573715 763 ntTSL 3 BASIC14.37□□□□□ -0.11
HSPG2P98160 ARL16-211ENST00000576135 694 ntTSL 3 BASIC14.37□□□□□ -0.11
HSPG2P98160 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
HSPG2P98160 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HSPG2P98160 MIR663A-201ENST00000385250 93 ntBASIC14.36□□□□□ -0.11
HSPG2P98160 pRNA.6-201ENST00000610482 90 ntBASIC14.36□□□□□ -0.11
HSPG2P98160 pRNA.5-201ENST00000612139 90 ntBASIC14.36□□□□□ -0.11
HSPG2P98160 pRNA.11-201ENST00000618423 90 ntBASIC14.36□□□□□ -0.11
HSPG2P98160 pRNA.13-201ENST00000619112 90 ntBASIC14.36□□□□□ -0.11
HSPG2P98160 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HSPG2P98160 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HSPG2P98160 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HSPG2P98160 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HSPG2P98160 AC006970.2-201ENST00000450065 779 ntBASIC14.36□□□□□ -0.11
HSPG2P98160 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC14.36□□□□□ -0.11
HSPG2P98160 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
HSPG2P98160 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HSPG2P98160 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HSPG2P98160 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
HSPG2P98160 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms