Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AC005498.2-205ENST00000593218 784 ntBASIC14.53□□□□□ -0.08
PKNOX1P55347 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 AP005019.2-201ENST00000615104 511 ntBASIC14.53□□□□□ -0.08
PKNOX1P55347 AC008761.3-201ENST00000624803 892 ntBASIC14.53□□□□□ -0.08
PKNOX1P55347 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC14.53□□□□□ -0.08
PKNOX1P55347 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 AC027612.1-201ENST00000445234 2395 ntBASIC14.53□□□□□ -0.08
PKNOX1P55347 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC14.53□□□□□ -0.08
PKNOX1P55347 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC14.53□□□□□ -0.08
PKNOX1P55347 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
PKNOX1P55347 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC14.53□□□□□ -0.08
PKNOX1P55347 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
PKNOX1P55347 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
PKNOX1P55347 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC14.53□□□□□ -0.08
PKNOX1P55347 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
PKNOX1P55347 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
PKNOX1P55347 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
PKNOX1P55347 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
PKNOX1P55347 SALL4P5-201ENST00000419001 1760 ntBASIC14.52□□□□□ -0.08
PKNOX1P55347 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.52□□□□□ -0.08
PKNOX1P55347 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
PKNOX1P55347 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
PKNOX1P55347 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
PKNOX1P55347 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
PKNOX1P55347 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
PKNOX1P55347 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
PKNOX1P55347 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
PKNOX1P55347 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.08
PKNOX1P55347 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
PKNOX1P55347 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC14.52□□□□□ -0.08
PKNOX1P55347 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC14.52□□□□□ -0.08
PKNOX1P55347 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC14.52□□□□□ -0.08
PKNOX1P55347 LRRC59-203ENST00000576448 1531 ntBASIC14.52□□□□□ -0.08
PKNOX1P55347 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
PKNOX1P55347 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
PKNOX1P55347 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
PKNOX1P55347 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
PKNOX1P55347 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
PKNOX1P55347 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC14.52□□□□□ -0.09
PKNOX1P55347 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
PKNOX1P55347 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.52□□□□□ -0.09
PKNOX1P55347 SERF2-209ENST00000409646 559 ntTSL 4 BASIC14.52□□□□□ -0.09
PKNOX1P55347 DFFBP1-201ENST00000433250 979 ntBASIC14.52□□□□□ -0.09
PKNOX1P55347 EIF3FP3-201ENST00000434851 1086 ntBASIC14.52□□□□□ -0.09
PKNOX1P55347 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
PKNOX1P55347 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
PKNOX1P55347 AL359711.2-201ENST00000563105 872 ntBASIC14.52□□□□□ -0.09
PKNOX1P55347 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.52□□□□□ -0.09
PKNOX1P55347 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.52□□□□□ -0.09
PKNOX1P55347 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
PKNOX1P55347 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
PKNOX1P55347 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.52□□□□□ -0.09
PKNOX1P55347 AC009118.2-201ENST00000613275 655 ntBASIC14.52□□□□□ -0.09
PKNOX1P55347 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
PKNOX1P55347 ORC5-208ENST00000626700 344 ntTSL 3 BASIC14.52□□□□□ -0.09
PKNOX1P55347 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC14.52□□□□□ -0.09
PKNOX1P55347 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
PKNOX1P55347 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
PKNOX1P55347 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
PKNOX1P55347 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC14.52□□□□□ -0.09
PKNOX1P55347 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
PKNOX1P55347 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.52□□□□□ -0.09
PKNOX1P55347 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC14.52□□□□□ -0.09
PKNOX1P55347 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
PKNOX1P55347 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
PKNOX1P55347 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC14.52□□□□□ -0.09
PKNOX1P55347 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
PKNOX1P55347 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PKNOX1P55347 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
PKNOX1P55347 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
PKNOX1P55347 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PKNOX1P55347 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC14.51□□□□□ -0.09
PKNOX1P55347 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PKNOX1P55347 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PKNOX1P55347 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PKNOX1P55347 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
PKNOX1P55347 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC14.51□□□□□ -0.09
PKNOX1P55347 AL391825.1-201ENST00000457671 1364 ntBASIC14.51□□□□□ -0.09
PKNOX1P55347 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.51□□□□□ -0.09
PKNOX1P55347 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PKNOX1P55347 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PKNOX1P55347 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
PKNOX1P55347 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PKNOX1P55347 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
PKNOX1P55347 AC012617.1-204ENST00000586340 2305 ntBASIC14.51□□□□□ -0.09
PKNOX1P55347 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PKNOX1P55347 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PKNOX1P55347 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PKNOX1P55347 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
PKNOX1P55347 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PKNOX1P55347 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
PKNOX1P55347 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.51□□□□□ -0.09
PKNOX1P55347 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC14.51□□□□□ -0.09
PKNOX1P55347 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.09
PKNOX1P55347 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.51□□□□□ -0.09
PKNOX1P55347 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms