Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC13.15□□□□□ -0.3
HOXC12P31275 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
HOXC12P31275 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC13.15□□□□□ -0.3
HOXC12P31275 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC13.15□□□□□ -0.3
HOXC12P31275 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC13.15□□□□□ -0.3
HOXC12P31275 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
HOXC12P31275 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC13.15□□□□□ -0.3
HOXC12P31275 KRTAP10-13P-201ENST00000412914 571 ntBASIC13.15□□□□□ -0.3
HOXC12P31275 MTX1P1-201ENST00000440904 838 ntBASIC13.15□□□□□ -0.3
HOXC12P31275 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC13.15□□□□□ -0.3
HOXC12P31275 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC13.15□□□□□ -0.3
HOXC12P31275 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC13.15□□□□□ -0.3
HOXC12P31275 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC13.15□□□□□ -0.3
HOXC12P31275 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC13.15□□□□□ -0.3
HOXC12P31275 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
HOXC12P31275 AC138466.3-201ENST00000619983 221 ntBASIC13.15□□□□□ -0.3
HOXC12P31275 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC13.15□□□□□ -0.3
HOXC12P31275 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
HOXC12P31275 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC13.15□□□□□ -0.3
HOXC12P31275 RNF216-205ENST00000425013 5639 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC13.15□□□□□ -0.3
HOXC12P31275 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
HOXC12P31275 CICP14-201ENST00000629111 2732 ntBASIC13.15□□□□□ -0.3
HOXC12P31275 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
HOXC12P31275 KRT8P19-201ENST00000551916 1455 ntBASIC13.15□□□□□ -0.3
HOXC12P31275 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC13.15□□□□□ -0.3
HOXC12P31275 MON1B-201ENST00000248248 6091 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC13.15□□□□□ -0.3
HOXC12P31275 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXC12P31275 AC092384.3-202ENST00000564646 2873 ntBASIC13.14□□□□□ -0.31
HOXC12P31275 FKBP4P6-201ENST00000457486 1332 ntBASIC13.14□□□□□ -0.31
HOXC12P31275 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC13.14□□□□□ -0.31
HOXC12P31275 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 PCDHGB8P-201ENST00000502926 1973 ntBASIC13.14□□□□□ -0.31
HOXC12P31275 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC13.14□□□□□ -0.31
HOXC12P31275 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
HOXC12P31275 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
HOXC12P31275 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
HOXC12P31275 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 CACNA1G-225ENST00000512389 6837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC13.14□□□□□ -0.31
HOXC12P31275 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC13.14□□□□□ -0.31
HOXC12P31275 TLE1P1-201ENST00000422965 589 ntBASIC13.14□□□□□ -0.31
HOXC12P31275 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
HOXC12P31275 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC13.14□□□□□ -0.31
HOXC12P31275 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC13.14□□□□□ -0.31
HOXC12P31275 HIST2H2BC-201ENST00000498492 580 ntBASIC13.14□□□□□ -0.31
HOXC12P31275 CDC23-208ENST00000505120 455 ntTSL 3 BASIC13.14□□□□□ -0.31
HOXC12P31275 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC13.14□□□□□ -0.31
HOXC12P31275 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
HOXC12P31275 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC13.14□□□□□ -0.31
HOXC12P31275 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC13.14□□□□□ -0.31
HOXC12P31275 MIR4706-201ENST00000582134 82 ntBASIC13.14□□□□□ -0.31
HOXC12P31275 NAT9-222ENST00000583476 583 ntTSL 3 BASIC13.14□□□□□ -0.31
HOXC12P31275 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC13.14□□□□□ -0.31
HOXC12P31275 ZACNP1-201ENST00000612259 710 ntBASIC13.14□□□□□ -0.31
HOXC12P31275 ASXL1-201ENST00000306058 6591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 ROBO1-201ENST00000436010 7501 ntTSL 5 BASIC13.14□□□□□ -0.31
HOXC12P31275 AC013268.4-201ENST00000637413 2228 ntBASIC13.14□□□□□ -0.31
HOXC12P31275 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms