Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC015656.1-201ENST00000624209 3578 ntBASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 FKBP4P6-201ENST00000457486 1332 ntBASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 LHX6-205ENST00000464484 666 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 AP000593.2-201ENST00000542775 1433 ntBASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 AC025279.2-201ENST00000569730 653 ntBASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 AC004466.1-201ENST00000599515 1080 ntBASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 AL022328.1-201ENST00000610050 478 ntBASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 AL118556.2-201ENST00000614375 824 ntBASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC14.79□□□□□ -0.04
VPS9D1Q9Y2B5 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 AP001267.2-201ENST00000532619 2086 ntBASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 CU639417.3-201ENST00000624240 1404 ntBASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 RN7SKP230-201ENST00000365642 335 ntBASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 RN7SL837P-201ENST00000463010 287 ntBASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 RN7SL692P-201ENST00000464677 288 ntBASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 CDC23-208ENST00000505120 455 ntTSL 3 BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 AC087762.1-201ENST00000559755 643 ntTSL 3 BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC14.78□□□□□ -0.04
VPS9D1Q9Y2B5 BX088702.1-201ENST00000610784 235 ntBASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms