Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 AC023024.2-201ENST00000623561 1993 ntBASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 AL157414.3-201ENST00000624276 1954 ntBASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 TOE1-201ENST00000372090 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 AC013268.4-201ENST00000637413 2228 ntBASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 AC104457.1-201ENST00000401024 814 ntBASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 NME6-203ENST00000415644 849 ntTSL 2 BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 AC007969.1-201ENST00000433675 447 ntBASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 AC104306.2-201ENST00000451877 341 ntBASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 AL022328.3-201ENST00000607943 679 ntBASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 AC244093.1-201ENST00000610837 814 ntBASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 ST20-AS1-201ENST00000560255 4223 ntBASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 AC015818.8-201ENST00000587907 1519 ntBASIC14.36□□□□□ -0.11
CLIP3Q96DZ5 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 RPS3-201ENST00000278572 907 ntTSL 3 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 POM121L8P-201ENST00000417732 1281 ntBASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 HLA-K-203ENST00000430151 1046 ntBASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 POM121L9P-203ENST00000441984 1285 ntBASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 CYGB-203ENST00000589145 788 ntTSL 3 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 KLK3-211ENST00000597483 810 ntTSL 2 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC14.35□□□□□ -0.11
CLIP3Q96DZ5 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms