Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC19.58■□□□□ 0.73
NPHP3Q7Z494 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC19.58■□□□□ 0.73
NPHP3Q7Z494 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
NPHP3Q7Z494 PTPN20CP-201ENST00000614090 920 ntBASIC19.58■□□□□ 0.73
NPHP3Q7Z494 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC19.58■□□□□ 0.73
NPHP3Q7Z494 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
NPHP3Q7Z494 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
NPHP3Q7Z494 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
NPHP3Q7Z494 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC19.58■□□□□ 0.73
NPHP3Q7Z494 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
NPHP3Q7Z494 LINC00528-201ENST00000600723 2160 ntBASIC19.58■□□□□ 0.72
NPHP3Q7Z494 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
NPHP3Q7Z494 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC19.58■□□□□ 0.72
NPHP3Q7Z494 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
NPHP3Q7Z494 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
NPHP3Q7Z494 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
NPHP3Q7Z494 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
NPHP3Q7Z494 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC19.58■□□□□ 0.72
NPHP3Q7Z494 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC19.58■□□□□ 0.72
NPHP3Q7Z494 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 PCDHGB8P-201ENST00000502926 1973 ntBASIC19.57■□□□□ 0.72
NPHP3Q7Z494 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 AC006987.1-201ENST00000413610 527 ntBASIC19.57■□□□□ 0.72
NPHP3Q7Z494 RN7SL788P-201ENST00000460504 316 ntBASIC19.57■□□□□ 0.72
NPHP3Q7Z494 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 KRT18P37-201ENST00000520711 1282 ntBASIC19.57■□□□□ 0.72
NPHP3Q7Z494 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 PCDHA1-201ENST00000378133 2726 ntBASIC19.57■□□□□ 0.72
NPHP3Q7Z494 WARS-232ENST00000556645 2508 ntTSL 5 BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC19.57■□□□□ 0.72
NPHP3Q7Z494 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 NHP2P1-201ENST00000335274 462 ntBASIC19.56■□□□□ 0.72
NPHP3Q7Z494 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 AP000354.1-201ENST00000396982 456 ntBASIC19.56■□□□□ 0.72
NPHP3Q7Z494 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 KRT18P4-201ENST00000422599 1288 ntBASIC19.56■□□□□ 0.72
NPHP3Q7Z494 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 AC023906.1-201ENST00000486386 453 ntBASIC19.56■□□□□ 0.72
NPHP3Q7Z494 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 KLF17P1-201ENST00000547105 1126 ntBASIC19.56■□□□□ 0.72
NPHP3Q7Z494 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 AC018846.1-201ENST00000568231 183 ntBASIC19.56■□□□□ 0.72
NPHP3Q7Z494 NT5C-204ENST00000578337 582 ntTSL 2 BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC19.56■□□□□ 0.72
NPHP3Q7Z494 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 ODCP-201ENST00000459650 1639 ntBASIC19.56■□□□□ 0.72
NPHP3Q7Z494 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPHP3Q7Z494 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms