Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 AC093726.1-201ENST00000608064 963 ntBASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 HFE2-206ENST00000634927 506 ntTSL 4 BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC39Q9UFE4 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CCDC39Q9UFE4 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CCDC39Q9UFE4 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
CCDC39Q9UFE4 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 INTS4P2-202ENST00000614726 2019 ntBASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 LILRP1-201ENST00000444199 1370 ntBASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 NIN-202ENST00000324330 4364 ntTSL 5 BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 METTL26-204ENST00000397665 558 ntTSL 2 BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 AC087499.6-201ENST00000411576 835 ntBASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 NUS1P3-201ENST00000423502 862 ntBASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 FAM207CP-201ENST00000443486 507 ntBASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC17.2■□□□□ 0.34
CCDC39Q9UFE4 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC39Q9UFE4 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC39Q9UFE4 AC007541.1-201ENST00000570282 1469 ntBASIC17.19■□□□□ 0.34
CCDC39Q9UFE4 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC39Q9UFE4 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC39Q9UFE4 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC39Q9UFE4 AL158070.2-201ENST00000623713 1621 ntBASIC17.19■□□□□ 0.34
CCDC39Q9UFE4 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
CCDC39Q9UFE4 PES1-204ENST00000402284 2144 ntTSL 5 BASIC17.19■□□□□ 0.34
CCDC39Q9UFE4 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC17.19■□□□□ 0.34
CCDC39Q9UFE4 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC17.19■□□□□ 0.34
CCDC39Q9UFE4 AL442647.2-201ENST00000429864 857 ntBASIC17.19■□□□□ 0.34
CCDC39Q9UFE4 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC17.19■□□□□ 0.34
CCDC39Q9UFE4 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC17.19■□□□□ 0.34
CCDC39Q9UFE4 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC17.19■□□□□ 0.34
CCDC39Q9UFE4 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC17.19■□□□□ 0.34
CCDC39Q9UFE4 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC17.19■□□□□ 0.34
CCDC39Q9UFE4 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC17.19■□□□□ 0.34
CCDC39Q9UFE4 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC17.19■□□□□ 0.34
CCDC39Q9UFE4 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC17.19■□□□□ 0.34
CCDC39Q9UFE4 AL132655.2-201ENST00000596276 594 ntBASIC17.19■□□□□ 0.34
CCDC39Q9UFE4 AL096865.1-201ENST00000606796 927 ntBASIC17.19■□□□□ 0.34
CCDC39Q9UFE4 MIR8072-201ENST00000614241 80 ntBASIC17.19■□□□□ 0.34
CCDC39Q9UFE4 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC17.19■□□□□ 0.34
CCDC39Q9UFE4 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC17.19■□□□□ 0.34
CCDC39Q9UFE4 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms