Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
ATL3Q6DD88 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
ATL3Q6DD88 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATL3Q6DD88 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC16.84■□□□□ 0.29
ATL3Q6DD88 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ATL3Q6DD88 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATL3Q6DD88 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
ATL3Q6DD88 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATL3Q6DD88 AC089987.1-201ENST00000551654 2209 ntBASIC16.84■□□□□ 0.29
ATL3Q6DD88 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATL3Q6DD88 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC16.84■□□□□ 0.29
ATL3Q6DD88 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATL3Q6DD88 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC16.84■□□□□ 0.29
ATL3Q6DD88 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATL3Q6DD88 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC16.84■□□□□ 0.29
ATL3Q6DD88 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC16.84■□□□□ 0.29
ATL3Q6DD88 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC16.84■□□□□ 0.29
ATL3Q6DD88 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC16.84■□□□□ 0.29
ATL3Q6DD88 AL391280.1-201ENST00000506969 1062 ntBASIC16.84■□□□□ 0.29
ATL3Q6DD88 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC16.84■□□□□ 0.29
ATL3Q6DD88 PTP4A1P2-201ENST00000546033 454 ntBASIC16.84■□□□□ 0.29
ATL3Q6DD88 AC140912.1-201ENST00000577171 1054 ntBASIC16.84■□□□□ 0.29
ATL3Q6DD88 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ATL3Q6DD88 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC16.84■□□□□ 0.29
ATL3Q6DD88 AC104506.1-201ENST00000609247 429 ntBASIC16.84■□□□□ 0.29
ATL3Q6DD88 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ATL3Q6DD88 AC134312.5-201ENST00000568031 1313 ntBASIC16.84■□□□□ 0.29
ATL3Q6DD88 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATL3Q6DD88 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATL3Q6DD88 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC16.84■□□□□ 0.29
ATL3Q6DD88 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATL3Q6DD88 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATL3Q6DD88 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATL3Q6DD88 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATL3Q6DD88 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATL3Q6DD88 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC16.84■□□□□ 0.29
ATL3Q6DD88 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC16.84■□□□□ 0.29
ATL3Q6DD88 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATL3Q6DD88 CETP-203ENST00000566128 1733 ntTSL 5 BASIC16.84■□□□□ 0.29
ATL3Q6DD88 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATL3Q6DD88 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATL3Q6DD88 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
ATL3Q6DD88 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATL3Q6DD88 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATL3Q6DD88 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATL3Q6DD88 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ATL3Q6DD88 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ATL3Q6DD88 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
ATL3Q6DD88 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
ATL3Q6DD88 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
ATL3Q6DD88 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC16.83■□□□□ 0.29
ATL3Q6DD88 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATL3Q6DD88 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATL3Q6DD88 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
ATL3Q6DD88 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
ATL3Q6DD88 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATL3Q6DD88 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.83■□□□□ 0.28
ATL3Q6DD88 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
ATL3Q6DD88 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATL3Q6DD88 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
ATL3Q6DD88 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC16.83■□□□□ 0.28
ATL3Q6DD88 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC16.83■□□□□ 0.28
ATL3Q6DD88 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC16.83■□□□□ 0.28
ATL3Q6DD88 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
ATL3Q6DD88 AC092183.1-201ENST00000469884 875 ntBASIC16.83■□□□□ 0.28
ATL3Q6DD88 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATL3Q6DD88 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
ATL3Q6DD88 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC16.83■□□□□ 0.28
ATL3Q6DD88 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
ATL3Q6DD88 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC16.83■□□□□ 0.28
ATL3Q6DD88 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC16.83■□□□□ 0.28
ATL3Q6DD88 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC16.83■□□□□ 0.28
ATL3Q6DD88 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC16.83■□□□□ 0.28
ATL3Q6DD88 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC16.83■□□□□ 0.28
ATL3Q6DD88 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATL3Q6DD88 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC16.83■□□□□ 0.28
ATL3Q6DD88 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATL3Q6DD88 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATL3Q6DD88 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
ATL3Q6DD88 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
ATL3Q6DD88 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
ATL3Q6DD88 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC16.82■□□□□ 0.28
ATL3Q6DD88 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ATL3Q6DD88 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATL3Q6DD88 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATL3Q6DD88 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC16.82■□□□□ 0.28
ATL3Q6DD88 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
ATL3Q6DD88 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATL3Q6DD88 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
ATL3Q6DD88 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATL3Q6DD88 KRT8P28-201ENST00000433288 1390 ntBASIC16.82■□□□□ 0.28
ATL3Q6DD88 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATL3Q6DD88 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATL3Q6DD88 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATL3Q6DD88 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATL3Q6DD88 MIR770-201ENST00000390219 98 ntBASIC16.82■□□□□ 0.28
ATL3Q6DD88 PIN1P1-201ENST00000412108 996 ntBASIC16.82■□□□□ 0.28
ATL3Q6DD88 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.82■□□□□ 0.28
ATL3Q6DD88 AL161932.2-201ENST00000435436 679 ntBASIC16.82■□□□□ 0.28
ATL3Q6DD88 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms