Protein–RNA interactions for Protein: Q9BXY4

RSPO3, R-spondin-3, humanhuman

Predicted RBP Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO3Q9BXY4 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.25
RSPO3Q9BXY4 AL358472.3-201ENST00000608147 415 ntBASIC13.52□□□□□ -0.25
RSPO3Q9BXY4 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
RSPO3Q9BXY4 SRP9-204ENST00000619790 377 ntTSL 2 BASIC13.52□□□□□ -0.25
RSPO3Q9BXY4 AC025048.6-201ENST00000634326 1161 ntBASIC13.52□□□□□ -0.25
RSPO3Q9BXY4 MVK-217ENST00000639206 367 ntTSL 5 BASIC13.52□□□□□ -0.25
RSPO3Q9BXY4 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC13.52□□□□□ -0.25
RSPO3Q9BXY4 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC13.52□□□□□ -0.25
RSPO3Q9BXY4 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RSPO3Q9BXY4 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
RSPO3Q9BXY4 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RSPO3Q9BXY4 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
RSPO3Q9BXY4 AC072061.1-201ENST00000569710 2234 ntBASIC13.52□□□□□ -0.25
RSPO3Q9BXY4 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC13.52□□□□□ -0.25
RSPO3Q9BXY4 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RSPO3Q9BXY4 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
RSPO3Q9BXY4 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RSPO3Q9BXY4 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
RSPO3Q9BXY4 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
RSPO3Q9BXY4 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
RSPO3Q9BXY4 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC13.52□□□□□ -0.25
RSPO3Q9BXY4 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 APP-205ENST00000358918 2366 ntTSL 5 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 AC005229.1-201ENST00000392885 409 ntBASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 AL161932.2-201ENST00000435436 679 ntBASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 BCRP2-202ENST00000447763 634 ntBASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 BCRP6-201ENST00000510112 632 ntBASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 BCRP7-201ENST00000511549 544 ntBASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 FUZ-207ENST00000526575 482 ntTSL 4 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 AC078819.1-201ENST00000547454 765 ntBASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 AC012085.1-201ENST00000548270 765 ntBASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 POLE2-203ENST00000553805 496 ntTSL 2 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 AC132938.2-201ENST00000579188 680 ntBASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 AC008735.3-201ENST00000596646 500 ntBASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 OR10B1P-201ENST00000601666 907 ntBASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 AL591163.1-201ENST00000641757 987 ntBASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC13.51□□□□□ -0.25
RSPO3Q9BXY4 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RSPO3Q9BXY4 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
RSPO3Q9BXY4 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
RSPO3Q9BXY4 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC13.5□□□□□ -0.25
RSPO3Q9BXY4 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC13.5□□□□□ -0.25
RSPO3Q9BXY4 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
RSPO3Q9BXY4 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
RSPO3Q9BXY4 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms