Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 FAS-202ENST00000352159 1722 ntTSL 5 BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 PES1-204ENST00000402284 2144 ntTSL 5 BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC17.35■□□□□ 0.37
SMC1BQ8NDV3 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 OR2A1-AS1-210ENST00000496968 531 ntBASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 AP003351.1-201ENST00000522743 668 ntTSL 3 BASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 AC013553.1-201ENST00000560906 267 ntBASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 AC020904.3-201ENST00000624199 442 ntBASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 AC103702.1-201ENST00000548801 2630 ntBASIC17.34■□□□□ 0.37
SMC1BQ8NDV3 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.33■□□□□ 0.37
SMC1BQ8NDV3 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.37
SMC1BQ8NDV3 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
SMC1BQ8NDV3 AC126755.1-201ENST00000525846 6405 ntBASIC17.33■□□□□ 0.37
SMC1BQ8NDV3 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
SMC1BQ8NDV3 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.37
SMC1BQ8NDV3 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.37
SMC1BQ8NDV3 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC17.33■□□□□ 0.37
SMC1BQ8NDV3 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
SMC1BQ8NDV3 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 MIR645-201ENST00000385283 94 ntBASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 CASP2-203ENST00000392925 616 ntTSL 3 BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 TLE1P1-201ENST00000422965 589 ntBASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 MAGEA7P-201ENST00000436482 942 ntBASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 AC098934.1-203ENST00000442868 1262 ntBASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 GTF2I-203ENST00000443166 979 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 AC107464.2-201ENST00000502923 569 ntTSL 2 BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 HINT1-205ENST00000508488 703 ntTSL 2 BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 AC003686.1-201ENST00000550956 1034 ntBASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 RN7SL602P-201ENST00000578326 324 ntBASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 RN7SL718P-201ENST00000581254 303 ntBASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 HELLS-212ENST00000630929 400 ntTSL 5 BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 ZBED1P1-201ENST00000502364 1930 ntBASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
SMC1BQ8NDV3 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SMC1BQ8NDV3 AP000354.1-201ENST00000396982 456 ntBASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms