Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC13.21□□□□□ -0.29
SKA3Q8IX90 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC13.21□□□□□ -0.29
SKA3Q8IX90 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.29
SKA3Q8IX90 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
SKA3Q8IX90 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC13.21□□□□□ -0.29
SKA3Q8IX90 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC13.21□□□□□ -0.29
SKA3Q8IX90 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC13.21□□□□□ -0.29
SKA3Q8IX90 CNTNAP3P2-201ENST00000617175 3861 ntBASIC13.21□□□□□ -0.29
SKA3Q8IX90 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
SKA3Q8IX90 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SKA3Q8IX90 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SKA3Q8IX90 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SKA3Q8IX90 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
SKA3Q8IX90 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
SKA3Q8IX90 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SKA3Q8IX90 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SKA3Q8IX90 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SKA3Q8IX90 MXI1-205ENST00000393134 889 ntTSL 2 BASIC13.21□□□□□ -0.29
SKA3Q8IX90 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
SKA3Q8IX90 AC005034.1-201ENST00000426657 489 ntBASIC13.21□□□□□ -0.29
SKA3Q8IX90 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC13.21□□□□□ -0.29
SKA3Q8IX90 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC13.21□□□□□ -0.29
SKA3Q8IX90 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC13.21□□□□□ -0.29
SKA3Q8IX90 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
SKA3Q8IX90 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
SKA3Q8IX90 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC13.21□□□□□ -0.29
SKA3Q8IX90 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC13.21□□□□□ -0.29
SKA3Q8IX90 GNRHR2-203ENST00000581100 1187 ntBASIC13.21□□□□□ -0.29
SKA3Q8IX90 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SKA3Q8IX90 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC13.21□□□□□ -0.29
SKA3Q8IX90 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
SKA3Q8IX90 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC13.21□□□□□ -0.29
SKA3Q8IX90 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC13.21□□□□□ -0.29
SKA3Q8IX90 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
SKA3Q8IX90 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SKA3Q8IX90 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
SKA3Q8IX90 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SKA3Q8IX90 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SKA3Q8IX90 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC13.21□□□□□ -0.29
SKA3Q8IX90 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC13.21□□□□□ -0.29
SKA3Q8IX90 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
SKA3Q8IX90 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
SKA3Q8IX90 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
SKA3Q8IX90 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.3
SKA3Q8IX90 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.3
SKA3Q8IX90 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
SKA3Q8IX90 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC13.21□□□□□ -0.3
SKA3Q8IX90 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
SKA3Q8IX90 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SKA3Q8IX90 OS9-204ENST00000389146 2091 ntTSL 2 BASIC13.2□□□□□ -0.3
SKA3Q8IX90 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SKA3Q8IX90 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
SKA3Q8IX90 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC13.2□□□□□ -0.3
SKA3Q8IX90 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC13.2□□□□□ -0.3
SKA3Q8IX90 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC13.2□□□□□ -0.3
SKA3Q8IX90 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
SKA3Q8IX90 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SKA3Q8IX90 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SKA3Q8IX90 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SKA3Q8IX90 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SKA3Q8IX90 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
SKA3Q8IX90 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SKA3Q8IX90 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SKA3Q8IX90 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SKA3Q8IX90 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
SKA3Q8IX90 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC13.2□□□□□ -0.3
SKA3Q8IX90 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC13.2□□□□□ -0.3
SKA3Q8IX90 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SKA3Q8IX90 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC13.2□□□□□ -0.3
SKA3Q8IX90 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC13.2□□□□□ -0.3
SKA3Q8IX90 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC13.2□□□□□ -0.3
SKA3Q8IX90 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SKA3Q8IX90 FTH1P14-201ENST00000482930 551 ntBASIC13.2□□□□□ -0.3
SKA3Q8IX90 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC13.2□□□□□ -0.3
SKA3Q8IX90 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC13.2□□□□□ -0.3
SKA3Q8IX90 AC025279.2-201ENST00000569730 653 ntBASIC13.2□□□□□ -0.3
SKA3Q8IX90 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC13.2□□□□□ -0.3
SKA3Q8IX90 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC13.2□□□□□ -0.3
SKA3Q8IX90 AC132938.4-201ENST00000623835 848 ntBASIC13.2□□□□□ -0.3
SKA3Q8IX90 AL035252.4-201ENST00000624174 288 ntBASIC13.2□□□□□ -0.3
SKA3Q8IX90 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
SKA3Q8IX90 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SKA3Q8IX90 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC13.2□□□□□ -0.3
SKA3Q8IX90 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
SKA3Q8IX90 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
SKA3Q8IX90 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SKA3Q8IX90 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SKA3Q8IX90 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SKA3Q8IX90 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SKA3Q8IX90 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SKA3Q8IX90 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
SKA3Q8IX90 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC13.2□□□□□ -0.3
SKA3Q8IX90 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SKA3Q8IX90 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
SKA3Q8IX90 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SKA3Q8IX90 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC13.2□□□□□ -0.3
SKA3Q8IX90 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
SKA3Q8IX90 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SKA3Q8IX90 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SKA3Q8IX90 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms