Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 SNORD3B-1-201ENST00000577988 758 ntBASIC21.73■■□□□ 1.07
SCAPERQ9BY12 GAS7-216ENST00000583882 553 ntTSL 5 BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 OR6D1P-202ENST00000641007 5290 ntBASIC21.73■■□□□ 1.07
SCAPERQ9BY12 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 MSANTD2P1-201ENST00000445341 1368 ntBASIC21.73■■□□□ 1.07
SCAPERQ9BY12 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 AC019109.1-201ENST00000401725 1874 ntBASIC21.73■■□□□ 1.07
SCAPERQ9BY12 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
SCAPERQ9BY12 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 AC008026.2-201ENST00000495438 348 ntBASIC21.72■■□□□ 1.07
SCAPERQ9BY12 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 KRT18P37-201ENST00000520711 1282 ntBASIC21.72■■□□□ 1.07
SCAPERQ9BY12 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 AC021016.3-201ENST00000608367 477 ntBASIC21.72■■□□□ 1.07
SCAPERQ9BY12 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 LAP3P2-201ENST00000454686 1454 ntBASIC21.72■■□□□ 1.07
SCAPERQ9BY12 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 NME6-208ENST00000435684 599 ntTSL 2 BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 AC068831.5-201ENST00000557387 328 ntBASIC21.72■■□□□ 1.07
SCAPERQ9BY12 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SCAPERQ9BY12 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 SKA2-205ENST00000580541 689 ntTSL 3 BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC21.71■■□□□ 1.07
SCAPERQ9BY12 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
SCAPERQ9BY12 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
SCAPERQ9BY12 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SCAPERQ9BY12 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms