Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 AF274858.1-201ENST00000406288 372 ntBASIC10.05□□□□□ -0.8
CSMD3Q7Z407 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 AC142086.5-202ENST00000562500 217 ntBASIC10.05□□□□□ -0.8
CSMD3Q7Z407 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 AC090136.2-201ENST00000517809 420 ntBASIC10.05□□□□□ -0.8
CSMD3Q7Z407 AC226150.1-201ENST00000544259 466 ntBASIC10.05□□□□□ -0.8
CSMD3Q7Z407 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 COQ4-204ENST00000608951 781 ntTSL 2 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 FUCA1P1-201ENST00000374476 1351 ntBASIC10.05□□□□□ -0.8
CSMD3Q7Z407 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 CYP2T1P-202ENST00000641596 2535 ntBASIC10.05□□□□□ -0.8
CSMD3Q7Z407 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 RPL14-203ENST00000416518 812 ntTSL 3 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 AC098934.1-203ENST00000442868 1262 ntBASIC10.05□□□□□ -0.8
CSMD3Q7Z407 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 KRT8P2-201ENST00000556193 944 ntBASIC10.05□□□□□ -0.8
CSMD3Q7Z407 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 MX1-218ENST00000619682 1980 ntTSL 5 BASIC10.05□□□□□ -0.8
CSMD3Q7Z407 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 BCRP4-201ENST00000506079 804 ntBASIC10.04□□□□□ -0.8
CSMD3Q7Z407 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 KLF17P1-201ENST00000547105 1126 ntBASIC10.04□□□□□ -0.8
CSMD3Q7Z407 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 MSANTD2P1-201ENST00000445341 1368 ntBASIC10.04□□□□□ -0.8
CSMD3Q7Z407 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 AC138761.6-201ENST00000583997 1423 ntBASIC10.04□□□□□ -0.8
CSMD3Q7Z407 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 GUSBP10-201ENST00000417412 665 ntBASIC10.04□□□□□ -0.8
CSMD3Q7Z407 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 CISD2-202ENST00000503643 808 ntTSL 2 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC10.04□□□□□ -0.8
CSMD3Q7Z407 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms