Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC13.78□□□□□ -0.2
RNF4P78317 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RNF4P78317 RPSAP36-202ENST00000494591 1261 ntBASIC13.78□□□□□ -0.2
RNF4P78317 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
RNF4P78317 AC092658.1-201ENST00000505836 891 ntBASIC13.78□□□□□ -0.2
RNF4P78317 AC100850.1-201ENST00000506768 649 ntBASIC13.78□□□□□ -0.2
RNF4P78317 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RNF4P78317 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC13.78□□□□□ -0.2
RNF4P78317 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC13.78□□□□□ -0.2
RNF4P78317 RN7SL219P-201ENST00000582872 296 ntBASIC13.78□□□□□ -0.2
RNF4P78317 KLK3-211ENST00000597483 810 ntTSL 2 BASIC13.78□□□□□ -0.2
RNF4P78317 AL136301.1-201ENST00000615830 422 ntBASIC13.78□□□□□ -0.2
RNF4P78317 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RNF4P78317 AP001002.3-201ENST00000623482 206 ntBASIC13.78□□□□□ -0.2
RNF4P78317 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC13.78□□□□□ -0.2
RNF4P78317 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC13.78□□□□□ -0.2
RNF4P78317 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC13.78□□□□□ -0.2
RNF4P78317 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
RNF4P78317 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
RNF4P78317 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC13.78□□□□□ -0.2
RNF4P78317 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC13.78□□□□□ -0.2
RNF4P78317 AC007292.2-201ENST00000593524 1812 ntBASIC13.78□□□□□ -0.2
RNF4P78317 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
RNF4P78317 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
RNF4P78317 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RNF4P78317 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC13.78□□□□□ -0.2
RNF4P78317 AL161772.1-201ENST00000610494 4412 ntBASIC13.78□□□□□ -0.2
RNF4P78317 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC13.78□□□□□ -0.2
RNF4P78317 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
RNF4P78317 AC013726.1-201ENST00000563747 2285 ntBASIC13.78□□□□□ -0.2
RNF4P78317 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC13.78□□□□□ -0.2
RNF4P78317 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RNF4P78317 MYO15B-237ENST00000642007 4893 ntBASIC13.78□□□□□ -0.2
RNF4P78317 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
RNF4P78317 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC13.78□□□□□ -0.2
RNF4P78317 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
RNF4P78317 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
RNF4P78317 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
RNF4P78317 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC13.77□□□□□ -0.2
RNF4P78317 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC13.77□□□□□ -0.2
RNF4P78317 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
RNF4P78317 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
RNF4P78317 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
RNF4P78317 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
RNF4P78317 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC13.77□□□□□ -0.21
RNF4P78317 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
RNF4P78317 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
RNF4P78317 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
RNF4P78317 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC13.77□□□□□ -0.21
RNF4P78317 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
RNF4P78317 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
RNF4P78317 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
RNF4P78317 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
RNF4P78317 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC13.77□□□□□ -0.21
RNF4P78317 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
RNF4P78317 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
RNF4P78317 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
RNF4P78317 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
RNF4P78317 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
RNF4P78317 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
RNF4P78317 NDUFAB1P1-201ENST00000404262 460 ntBASIC13.77□□□□□ -0.21
RNF4P78317 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
RNF4P78317 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
RNF4P78317 PFN1P12-201ENST00000455938 534 ntBASIC13.77□□□□□ -0.21
RNF4P78317 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC13.77□□□□□ -0.21
RNF4P78317 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
RNF4P78317 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC13.77□□□□□ -0.21
RNF4P78317 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC13.77□□□□□ -0.21
RNF4P78317 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC13.77□□□□□ -0.21
RNF4P78317 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC13.77□□□□□ -0.21
RNF4P78317 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
RNF4P78317 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC13.77□□□□□ -0.21
RNF4P78317 RNF41-210ENST00000552244 716 ntTSL 3 BASIC13.77□□□□□ -0.21
RNF4P78317 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC13.77□□□□□ -0.21
RNF4P78317 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.21
RNF4P78317 AC091271.1-201ENST00000611877 1162 ntBASIC13.77□□□□□ -0.21
RNF4P78317 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
RNF4P78317 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC13.77□□□□□ -0.21
RNF4P78317 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC13.77□□□□□ -0.21
RNF4P78317 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
RNF4P78317 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
RNF4P78317 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
RNF4P78317 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
RNF4P78317 TNRC18P2-201ENST00000417666 2714 ntBASIC13.77□□□□□ -0.21
RNF4P78317 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
RNF4P78317 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
RNF4P78317 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC13.77□□□□□ -0.21
RNF4P78317 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC13.76□□□□□ -0.21
RNF4P78317 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RNF4P78317 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
RNF4P78317 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RNF4P78317 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC13.76□□□□□ -0.21
RNF4P78317 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
RNF4P78317 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
RNF4P78317 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
RNF4P78317 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
RNF4P78317 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
RNF4P78317 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC13.76□□□□□ -0.21
RNF4P78317 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
RNF4P78317 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms