Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC13.33□□□□□ -0.28
H3F3AP84243 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC13.32□□□□□ -0.28
H3F3AP84243 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC13.32□□□□□ -0.28
H3F3AP84243 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
H3F3AP84243 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC13.32□□□□□ -0.28
H3F3AP84243 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC13.32□□□□□ -0.28
H3F3AP84243 AC009093.2-202ENST00000620513 2079 ntBASIC13.32□□□□□ -0.28
H3F3AP84243 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC13.32□□□□□ -0.28
H3F3AP84243 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC13.32□□□□□ -0.28
H3F3AP84243 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
H3F3AP84243 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC13.32□□□□□ -0.28
H3F3AP84243 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 OR8S1-201ENST00000310194 1080 ntBASIC13.32□□□□□ -0.28
H3F3AP84243 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC13.32□□□□□ -0.28
H3F3AP84243 MIR1202-201ENST00000408529 83 ntBASIC13.32□□□□□ -0.28
H3F3AP84243 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
H3F3AP84243 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 COX5BP1-201ENST00000507622 393 ntBASIC13.32□□□□□ -0.28
H3F3AP84243 AC023310.1-201ENST00000554836 735 ntBASIC13.32□□□□□ -0.28
H3F3AP84243 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC13.32□□□□□ -0.28
H3F3AP84243 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC13.32□□□□□ -0.28
H3F3AP84243 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC13.32□□□□□ -0.28
H3F3AP84243 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC13.32□□□□□ -0.28
H3F3AP84243 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC13.32□□□□□ -0.28
H3F3AP84243 AC017083.2-201ENST00000608069 979 ntBASIC13.32□□□□□ -0.28
H3F3AP84243 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC13.32□□□□□ -0.28
H3F3AP84243 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC13.32□□□□□ -0.28
H3F3AP84243 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC13.32□□□□□ -0.28
H3F3AP84243 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC13.32□□□□□ -0.28
H3F3AP84243 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
H3F3AP84243 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC13.32□□□□□ -0.28
H3F3AP84243 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
H3F3AP84243 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
H3F3AP84243 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
H3F3AP84243 AMT-204ENST00000427987 1646 ntTSL 5 BASIC13.31□□□□□ -0.28
H3F3AP84243 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC13.31□□□□□ -0.28
H3F3AP84243 AC104581.4-201ENST00000623126 3052 ntBASIC13.31□□□□□ -0.28
H3F3AP84243 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
H3F3AP84243 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC13.31□□□□□ -0.28
H3F3AP84243 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
H3F3AP84243 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
H3F3AP84243 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
H3F3AP84243 AL354702.1-201ENST00000442006 1960 ntBASIC13.31□□□□□ -0.28
H3F3AP84243 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
H3F3AP84243 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC13.31□□□□□ -0.28
H3F3AP84243 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
H3F3AP84243 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC13.31□□□□□ -0.28
H3F3AP84243 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
H3F3AP84243 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
H3F3AP84243 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
H3F3AP84243 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
H3F3AP84243 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
H3F3AP84243 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
H3F3AP84243 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
H3F3AP84243 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
H3F3AP84243 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC13.31□□□□□ -0.28
H3F3AP84243 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC13.31□□□□□ -0.28
H3F3AP84243 RGS5-214ENST00000429865 754 ntTSL 3 BASIC13.31□□□□□ -0.28
H3F3AP84243 WBP2-203ENST00000433525 928 ntTSL 2 BASIC13.31□□□□□ -0.28
H3F3AP84243 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC13.31□□□□□ -0.28
H3F3AP84243 CSF2RBP1-201ENST00000447905 391 ntBASIC13.31□□□□□ -0.28
H3F3AP84243 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC13.31□□□□□ -0.28
H3F3AP84243 CDC23-208ENST00000505120 455 ntTSL 3 BASIC13.31□□□□□ -0.28
H3F3AP84243 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC13.31□□□□□ -0.28
H3F3AP84243 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC13.31□□□□□ -0.28
H3F3AP84243 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC13.31□□□□□ -0.28
H3F3AP84243 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC13.31□□□□□ -0.28
H3F3AP84243 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC13.31□□□□□ -0.28
H3F3AP84243 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC13.31□□□□□ -0.28
H3F3AP84243 ZACNP1-201ENST00000612259 710 ntBASIC13.31□□□□□ -0.28
H3F3AP84243 MIR6805-201ENST00000615055 62 ntBASIC13.31□□□□□ -0.28
H3F3AP84243 COX11-210ENST00000639671 696 ntBASIC13.31□□□□□ -0.28
H3F3AP84243 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
H3F3AP84243 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
H3F3AP84243 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC13.31□□□□□ -0.28
H3F3AP84243 AC232323.1-201ENST00000540724 2099 ntBASIC13.31□□□□□ -0.28
H3F3AP84243 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms