Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC14.42□□□□□ -0.1
CLDN9O95484 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLDN9O95484 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLDN9O95484 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC14.42□□□□□ -0.1
CLDN9O95484 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC14.42□□□□□ -0.1
CLDN9O95484 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC14.42□□□□□ -0.1
CLDN9O95484 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.42□□□□□ -0.1
CLDN9O95484 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLDN9O95484 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLDN9O95484 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLDN9O95484 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLDN9O95484 NIN-202ENST00000324330 4364 ntTSL 5 BASIC14.42□□□□□ -0.1
CLDN9O95484 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLDN9O95484 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLDN9O95484 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CLDN9O95484 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC14.41□□□□□ -0.1
CLDN9O95484 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
CLDN9O95484 AC134312.5-201ENST00000568031 1313 ntBASIC14.41□□□□□ -0.1
CLDN9O95484 MRPL37P1-201ENST00000592451 1337 ntBASIC14.41□□□□□ -0.1
CLDN9O95484 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLDN9O95484 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLDN9O95484 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC14.41□□□□□ -0.1
CLDN9O95484 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
CLDN9O95484 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.41□□□□□ -0.1
CLDN9O95484 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLDN9O95484 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CLDN9O95484 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC14.41□□□□□ -0.1
CLDN9O95484 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC14.41□□□□□ -0.1
CLDN9O95484 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
CLDN9O95484 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC14.41□□□□□ -0.1
CLDN9O95484 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLDN9O95484 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.41□□□□□ -0.1
CLDN9O95484 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.41□□□□□ -0.1
CLDN9O95484 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLDN9O95484 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLDN9O95484 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLDN9O95484 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLDN9O95484 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLDN9O95484 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
CLDN9O95484 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLDN9O95484 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLDN9O95484 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
CLDN9O95484 DGCR5-201ENST00000399539 862 ntBASIC14.41□□□□□ -0.1
CLDN9O95484 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
CLDN9O95484 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC14.41□□□□□ -0.1
CLDN9O95484 BAATP1-201ENST00000412284 1225 ntBASIC14.41□□□□□ -0.1
CLDN9O95484 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.41□□□□□ -0.1
CLDN9O95484 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC14.41□□□□□ -0.1
CLDN9O95484 ACTG1P3-201ENST00000431775 1114 ntBASIC14.41□□□□□ -0.1
CLDN9O95484 AC012441.1-201ENST00000446669 685 ntBASIC14.41□□□□□ -0.1
CLDN9O95484 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC14.41□□□□□ -0.1
CLDN9O95484 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC14.41□□□□□ -0.1
CLDN9O95484 AC131206.1-201ENST00000538078 1211 ntBASIC14.41□□□□□ -0.1
CLDN9O95484 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.41□□□□□ -0.1
CLDN9O95484 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14.41□□□□□ -0.1
CLDN9O95484 AL355385.1-201ENST00000606123 409 ntBASIC14.41□□□□□ -0.1
CLDN9O95484 AC145423.3-201ENST00000615987 467 ntBASIC14.41□□□□□ -0.1
CLDN9O95484 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC14.41□□□□□ -0.1
CLDN9O95484 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLDN9O95484 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLDN9O95484 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
CLDN9O95484 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLDN9O95484 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CLDN9O95484 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CLDN9O95484 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLDN9O95484 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
CLDN9O95484 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLDN9O95484 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CLDN9O95484 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLDN9O95484 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLDN9O95484 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC14.41□□□□□ -0.1
CLDN9O95484 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.41□□□□□ -0.1
CLDN9O95484 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CLDN9O95484 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLDN9O95484 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
CLDN9O95484 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
CLDN9O95484 MSTO2P-201ENST00000314835 1709 ntBASIC14.41□□□□□ -0.1
CLDN9O95484 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLDN9O95484 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLDN9O95484 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLDN9O95484 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC14.4□□□□□ -0.1
CLDN9O95484 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
CLDN9O95484 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
CLDN9O95484 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC14.4□□□□□ -0.1
CLDN9O95484 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
CLDN9O95484 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLDN9O95484 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLDN9O95484 AC136759.1-202ENST00000530858 2194 ntBASIC14.4□□□□□ -0.1
CLDN9O95484 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
CLDN9O95484 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLDN9O95484 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLDN9O95484 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLDN9O95484 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
CLDN9O95484 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLDN9O95484 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.4□□□□□ -0.1
CLDN9O95484 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLDN9O95484 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLDN9O95484 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLDN9O95484 WDR53-203ENST00000429115 683 ntTSL 2 BASIC14.4□□□□□ -0.1
CLDN9O95484 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms