Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLRN1P58418 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLRN1P58418 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC13.37□□□□□ -0.27
CLRN1P58418 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.37□□□□□ -0.27
CLRN1P58418 MPI-203ENST00000535694 1523 ntTSL 2 BASIC13.37□□□□□ -0.27
CLRN1P58418 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLRN1P58418 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLRN1P58418 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC13.37□□□□□ -0.27
CLRN1P58418 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC13.37□□□□□ -0.27
CLRN1P58418 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC13.37□□□□□ -0.27
CLRN1P58418 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
CLRN1P58418 AC113367.3-201ENST00000508316 1912 ntBASIC13.37□□□□□ -0.27
CLRN1P58418 AC134312.5-201ENST00000568031 1313 ntBASIC13.37□□□□□ -0.27
CLRN1P58418 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
CLRN1P58418 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC13.36□□□□□ -0.27
CLRN1P58418 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC13.36□□□□□ -0.27
CLRN1P58418 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLRN1P58418 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
CLRN1P58418 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLRN1P58418 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLRN1P58418 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLRN1P58418 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLRN1P58418 AL031595.1-201ENST00000623969 4709 ntBASIC13.36□□□□□ -0.27
CLRN1P58418 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLRN1P58418 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLRN1P58418 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
CLRN1P58418 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLRN1P58418 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLRN1P58418 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLRN1P58418 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CLRN1P58418 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC13.36□□□□□ -0.27
CLRN1P58418 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLRN1P58418 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC13.36□□□□□ -0.27
CLRN1P58418 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC13.36□□□□□ -0.27
CLRN1P58418 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
CLRN1P58418 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLRN1P58418 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CLRN1P58418 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CLRN1P58418 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLRN1P58418 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLRN1P58418 BAATP1-201ENST00000412284 1225 ntBASIC13.36□□□□□ -0.27
CLRN1P58418 AC007969.1-201ENST00000433675 447 ntBASIC13.36□□□□□ -0.27
CLRN1P58418 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC13.36□□□□□ -0.27
CLRN1P58418 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLRN1P58418 AC010319.3-201ENST00000597028 470 ntBASIC13.36□□□□□ -0.27
CLRN1P58418 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC13.36□□□□□ -0.27
CLRN1P58418 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLRN1P58418 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC13.36□□□□□ -0.27
CLRN1P58418 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC13.36□□□□□ -0.27
CLRN1P58418 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CLRN1P58418 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLRN1P58418 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC13.36□□□□□ -0.27
CLRN1P58418 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CLRN1P58418 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC13.36□□□□□ -0.27
CLRN1P58418 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC13.36□□□□□ -0.27
CLRN1P58418 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
CLRN1P58418 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CLRN1P58418 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CLRN1P58418 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CLRN1P58418 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC13.36□□□□□ -0.27
CLRN1P58418 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
CLRN1P58418 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC13.36□□□□□ -0.27
CLRN1P58418 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
CLRN1P58418 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
CLRN1P58418 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
CLRN1P58418 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC13.35□□□□□ -0.27
CLRN1P58418 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC13.35□□□□□ -0.27
CLRN1P58418 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.35□□□□□ -0.27
CLRN1P58418 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC13.35□□□□□ -0.27
CLRN1P58418 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC13.35□□□□□ -0.27
CLRN1P58418 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
CLRN1P58418 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
CLRN1P58418 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
CLRN1P58418 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLRN1P58418 SALL4P5-201ENST00000419001 1760 ntBASIC13.35□□□□□ -0.27
CLRN1P58418 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.35□□□□□ -0.27
CLRN1P58418 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLRN1P58418 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CLRN1P58418 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC13.35□□□□□ -0.27
CLRN1P58418 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLRN1P58418 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLRN1P58418 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CLRN1P58418 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLRN1P58418 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
CLRN1P58418 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.35□□□□□ -0.27
CLRN1P58418 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
CLRN1P58418 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
CLRN1P58418 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC13.35□□□□□ -0.27
CLRN1P58418 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC13.35□□□□□ -0.27
CLRN1P58418 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLRN1P58418 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLRN1P58418 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CLRN1P58418 ACTG1P3-201ENST00000431775 1114 ntBASIC13.35□□□□□ -0.27
CLRN1P58418 AC012441.1-201ENST00000446669 685 ntBASIC13.35□□□□□ -0.27
CLRN1P58418 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC13.35□□□□□ -0.27
CLRN1P58418 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
CLRN1P58418 AC068587.3-201ENST00000526613 355 ntBASIC13.35□□□□□ -0.27
CLRN1P58418 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
CLRN1P58418 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC13.35□□□□□ -0.27
CLRN1P58418 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms