Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.79■□□□□ 0.92
SUMO3P55854 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.79■□□□□ 0.92
SUMO3P55854 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
SUMO3P55854 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.79■□□□□ 0.92
SUMO3P55854 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SUMO3P55854 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
SUMO3P55854 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SUMO3P55854 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SUMO3P55854 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SUMO3P55854 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.78■□□□□ 0.92
SUMO3P55854 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
SUMO3P55854 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
SUMO3P55854 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.78■□□□□ 0.92
SUMO3P55854 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.78■□□□□ 0.92
SUMO3P55854 MTDHP2-201ENST00000601468 714 ntBASIC20.78■□□□□ 0.92
SUMO3P55854 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SUMO3P55854 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SUMO3P55854 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SUMO3P55854 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SUMO3P55854 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SUMO3P55854 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.78■□□□□ 0.92
SUMO3P55854 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
SUMO3P55854 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SUMO3P55854 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
SUMO3P55854 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SUMO3P55854 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SUMO3P55854 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SUMO3P55854 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
SUMO3P55854 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.77■□□□□ 0.92
SUMO3P55854 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SUMO3P55854 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.77■□□□□ 0.92
SUMO3P55854 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.77■□□□□ 0.92
SUMO3P55854 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SUMO3P55854 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SUMO3P55854 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.91
SUMO3P55854 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
SUMO3P55854 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
SUMO3P55854 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.77■□□□□ 0.91
SUMO3P55854 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SUMO3P55854 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.76■□□□□ 0.91
SUMO3P55854 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SUMO3P55854 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.76■□□□□ 0.91
SUMO3P55854 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SUMO3P55854 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SUMO3P55854 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SUMO3P55854 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SUMO3P55854 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.75■□□□□ 0.91
SUMO3P55854 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.75■□□□□ 0.91
SUMO3P55854 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.75■□□□□ 0.91
SUMO3P55854 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SUMO3P55854 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SUMO3P55854 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SUMO3P55854 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SUMO3P55854 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.75■□□□□ 0.91
SUMO3P55854 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.75■□□□□ 0.91
SUMO3P55854 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SUMO3P55854 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SUMO3P55854 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SUMO3P55854 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SUMO3P55854 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SUMO3P55854 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
SUMO3P55854 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.74■□□□□ 0.91
SUMO3P55854 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SUMO3P55854 GUSBP5-201ENST00000418136 578 ntBASIC20.74■□□□□ 0.91
SUMO3P55854 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SUMO3P55854 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.74■□□□□ 0.91
SUMO3P55854 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
SUMO3P55854 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SUMO3P55854 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SUMO3P55854 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SUMO3P55854 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SUMO3P55854 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SUMO3P55854 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SUMO3P55854 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SUMO3P55854 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.73■□□□□ 0.91
SUMO3P55854 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SUMO3P55854 AC010997.5-201ENST00000609182 354 ntBASIC20.73■□□□□ 0.91
SUMO3P55854 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SUMO3P55854 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.73■□□□□ 0.91
SUMO3P55854 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SUMO3P55854 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SUMO3P55854 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SUMO3P55854 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SUMO3P55854 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SUMO3P55854 TSPY9P-201ENST00000440215 945 ntBASIC20.72■□□□□ 0.91
SUMO3P55854 TSPY11P-201ENST00000442607 1045 ntBASIC20.72■□□□□ 0.91
SUMO3P55854 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.72■□□□□ 0.91
SUMO3P55854 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SUMO3P55854 AC005703.6-201ENST00000623265 1329 ntBASIC20.72■□□□□ 0.91
SUMO3P55854 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.72■□□□□ 0.91
SUMO3P55854 ABCB10P4-201ENST00000566803 2184 ntBASIC20.72■□□□□ 0.91
SUMO3P55854 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.72■□□□□ 0.91
SUMO3P55854 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
SUMO3P55854 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.71■□□□□ 0.91
SUMO3P55854 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.71■□□□□ 0.91
SUMO3P55854 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.71■□□□□ 0.91
SUMO3P55854 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SUMO3P55854 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SUMO3P55854 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SUMO3P55854 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms