Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM4Q9C037 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM4Q9C037 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM4Q9C037 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM4Q9C037 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM4Q9C037 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 HIST1H2BPS3-201ENST00000419683 341 ntBASIC15.1■□□□□ 0.01
TRIM4Q9C037 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM4Q9C037 ACTBP11-201ENST00000436287 1126 ntBASIC15.1■□□□□ 0.01
TRIM4Q9C037 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM4Q9C037 TPI1-206ENST00000488464 791 ntTSL 5 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 GLI4-203ENST00000517468 963 ntTSL 5 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM4Q9C037 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM4Q9C037 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM4Q9C037 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM4Q9C037 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 AC087499.5-201ENST00000452760 1342 ntBASIC15.1■□□□□ 0.01
TRIM4Q9C037 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM4Q9C037 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM4Q9C037 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM4Q9C037 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM4Q9C037 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
TRIM4Q9C037 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC15.1■□□□□ 0.01
TRIM4Q9C037 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM4Q9C037 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC15.09■□□□□ 0.01
TRIM4Q9C037 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM4Q9C037 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM4Q9C037 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM4Q9C037 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM4Q9C037 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC15.09■□□□□ 0.01
TRIM4Q9C037 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.09■□□□□ 0.01
TRIM4Q9C037 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM4Q9C037 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC15.09■□□□□ 0.01
TRIM4Q9C037 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM4Q9C037 FAM220BP-201ENST00000377689 816 ntBASIC15.09■□□□□ 0.01
TRIM4Q9C037 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC15.09■□□□□ 0.01
TRIM4Q9C037 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC15.09■□□□□ 0.01
TRIM4Q9C037 CROCCP4-201ENST00000457096 498 ntBASIC15.09■□□□□ 0.01
TRIM4Q9C037 AC099548.2-209ENST00000480264 625 ntBASIC15.09■□□□□ 0.01
TRIM4Q9C037 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
TRIM4Q9C037 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC15.09■□□□□ 0.01
TRIM4Q9C037 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC15.09■□□□□ 0.01
TRIM4Q9C037 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM4Q9C037 AL589739.1-201ENST00000607720 493 ntBASIC15.09■□□□□ 0.01
TRIM4Q9C037 AC004790.1-201ENST00000612686 536 ntBASIC15.09■□□□□ 0.01
TRIM4Q9C037 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM4Q9C037 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC15.09■□□□□ 0.01
TRIM4Q9C037 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM4Q9C037 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC15.09■□□□□ 0.01
TRIM4Q9C037 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM4Q9C037 DLG4-203ENST00000399510 3975 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM4Q9C037 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM4Q9C037 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM4Q9C037 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM4Q9C037 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM4Q9C037 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC15.09■□□□□ 0.01
TRIM4Q9C037 AL136982.4-201ENST00000437689 1740 ntBASIC15.09■□□□□ 0.01
TRIM4Q9C037 PI4KA-201ENST00000255882 6752 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM4Q9C037 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
TRIM4Q9C037 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
TRIM4Q9C037 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
TRIM4Q9C037 AC105250.1-201ENST00000509378 2057 ntBASIC15.08■□□□□ 0.01
TRIM4Q9C037 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0.01
TRIM4Q9C037 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.08■□□□□ 0.01
TRIM4Q9C037 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
TRIM4Q9C037 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
TRIM4Q9C037 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC15.08■□□□□ 0.01
TRIM4Q9C037 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC15.08■□□□□ 0.01
TRIM4Q9C037 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
TRIM4Q9C037 CETN4P-206ENST00000642099 2168 ntBASIC15.08■□□□□ 0.01
TRIM4Q9C037 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
TRIM4Q9C037 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0.01
TRIM4Q9C037 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
TRIM4Q9C037 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM4Q9C037 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM4Q9C037 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
TRIM4Q9C037 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.08■□□□□ 0
TRIM4Q9C037 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms