Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 CICP23-201ENST00000605013 2741 ntBASIC13.28□□□□□ -0.28
SKA3Q8IX90 AC013726.1-201ENST00000563747 2285 ntBASIC13.28□□□□□ -0.28
SKA3Q8IX90 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
SKA3Q8IX90 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SKA3Q8IX90 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
SKA3Q8IX90 AC005912.2-201ENST00000619492 2400 ntBASIC13.28□□□□□ -0.28
SKA3Q8IX90 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SKA3Q8IX90 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SKA3Q8IX90 FGD5P1-202ENST00000614866 2498 ntBASIC13.28□□□□□ -0.28
SKA3Q8IX90 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
SKA3Q8IX90 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SKA3Q8IX90 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SKA3Q8IX90 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SKA3Q8IX90 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
SKA3Q8IX90 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
SKA3Q8IX90 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SKA3Q8IX90 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
SKA3Q8IX90 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC13.28□□□□□ -0.28
SKA3Q8IX90 GIMAP3P-201ENST00000495150 836 ntBASIC13.28□□□□□ -0.28
SKA3Q8IX90 FUZ-207ENST00000526575 482 ntTSL 4 BASIC13.28□□□□□ -0.28
SKA3Q8IX90 SLC25A47P1-201ENST00000531577 414 ntBASIC13.28□□□□□ -0.28
SKA3Q8IX90 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC13.28□□□□□ -0.28
SKA3Q8IX90 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC13.28□□□□□ -0.28
SKA3Q8IX90 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC13.28□□□□□ -0.28
SKA3Q8IX90 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC13.28□□□□□ -0.28
SKA3Q8IX90 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
SKA3Q8IX90 BEND3P1-201ENST00000421591 1944 ntBASIC13.28□□□□□ -0.28
SKA3Q8IX90 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
SKA3Q8IX90 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC13.28□□□□□ -0.28
SKA3Q8IX90 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
SKA3Q8IX90 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC13.28□□□□□ -0.28
SKA3Q8IX90 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC13.28□□□□□ -0.28
SKA3Q8IX90 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SKA3Q8IX90 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SKA3Q8IX90 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
SKA3Q8IX90 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC13.28□□□□□ -0.28
SKA3Q8IX90 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SKA3Q8IX90 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SKA3Q8IX90 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SKA3Q8IX90 SF1-209ENST00000433274 2317 ntTSL 2 BASIC13.28□□□□□ -0.28
SKA3Q8IX90 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SKA3Q8IX90 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SKA3Q8IX90 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
SKA3Q8IX90 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
SKA3Q8IX90 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SKA3Q8IX90 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SKA3Q8IX90 AC107918.4-201ENST00000641966 3141 ntBASIC13.27□□□□□ -0.28
SKA3Q8IX90 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
SKA3Q8IX90 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC13.27□□□□□ -0.28
SKA3Q8IX90 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
SKA3Q8IX90 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SKA3Q8IX90 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SKA3Q8IX90 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC13.27□□□□□ -0.28
SKA3Q8IX90 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SKA3Q8IX90 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SKA3Q8IX90 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
SKA3Q8IX90 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SKA3Q8IX90 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SKA3Q8IX90 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SKA3Q8IX90 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 TMEM14DP-201ENST00000422205 345 ntBASIC13.27□□□□□ -0.29
SKA3Q8IX90 RPL28-203ENST00000428193 573 ntTSL 2 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 RPL28-204ENST00000431533 590 ntTSL 2 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 PNKD-204ENST00000436005 978 ntTSL 5 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
SKA3Q8IX90 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 AP001889.1-201ENST00000525414 633 ntBASIC13.27□□□□□ -0.29
SKA3Q8IX90 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SKA3Q8IX90 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SKA3Q8IX90 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 RPL28-207ENST00000558815 616 ntTSL 2 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SKA3Q8IX90 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 AC015936.2-201ENST00000593177 259 ntBASIC13.27□□□□□ -0.29
SKA3Q8IX90 AC008735.3-201ENST00000596646 500 ntBASIC13.27□□□□□ -0.29
SKA3Q8IX90 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 AC012645.4-201ENST00000610691 1061 ntBASIC13.27□□□□□ -0.29
SKA3Q8IX90 AC145423.3-201ENST00000615987 467 ntBASIC13.27□□□□□ -0.29
SKA3Q8IX90 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
SKA3Q8IX90 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SKA3Q8IX90 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SKA3Q8IX90 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC13.27□□□□□ -0.29
SKA3Q8IX90 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC13.27□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms