Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AP005264.5-201ENST00000590066 467 ntBASIC19.17■□□□□ 0.66
USP54Q70EL1 LINC00244-201ENST00000625073 613 ntBASIC19.17■□□□□ 0.66
USP54Q70EL1 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC19.17■□□□□ 0.66
USP54Q70EL1 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USP54Q70EL1 AC018529.2-202ENST00000611482 3087 ntBASIC19.17■□□□□ 0.66
USP54Q70EL1 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP54Q70EL1 AC104640.1-201ENST00000562617 2109 ntBASIC19.17■□□□□ 0.66
USP54Q70EL1 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP54Q70EL1 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC19.17■□□□□ 0.66
USP54Q70EL1 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
USP54Q70EL1 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC19.17■□□□□ 0.66
USP54Q70EL1 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
USP54Q70EL1 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP54Q70EL1 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
USP54Q70EL1 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP54Q70EL1 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP54Q70EL1 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USP54Q70EL1 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP54Q70EL1 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP54Q70EL1 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
USP54Q70EL1 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
USP54Q70EL1 AC073210.1-201ENST00000414799 232 ntBASIC19.17■□□□□ 0.66
USP54Q70EL1 RPS23-207ENST00000511844 530 ntTSL 2 BASIC19.17■□□□□ 0.66
USP54Q70EL1 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC19.17■□□□□ 0.66
USP54Q70EL1 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
USP54Q70EL1 AC013553.1-201ENST00000560906 267 ntBASIC19.17■□□□□ 0.66
USP54Q70EL1 AC012073.1-201ENST00000606114 1108 ntBASIC19.17■□□□□ 0.66
USP54Q70EL1 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP54Q70EL1 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP54Q70EL1 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
USP54Q70EL1 DUT-208ENST00000559540 1441 ntTSL 2 BASIC19.17■□□□□ 0.66
USP54Q70EL1 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USP54Q70EL1 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC19.17■□□□□ 0.66
USP54Q70EL1 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USP54Q70EL1 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USP54Q70EL1 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
USP54Q70EL1 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC19.16■□□□□ 0.66
USP54Q70EL1 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP54Q70EL1 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP54Q70EL1 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP54Q70EL1 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP54Q70EL1 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP54Q70EL1 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC19.16■□□□□ 0.66
USP54Q70EL1 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP54Q70EL1 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP54Q70EL1 ALG1L7P-201ENST00000502317 768 ntBASIC19.16■□□□□ 0.66
USP54Q70EL1 SLC25A15P3-201ENST00000505530 290 ntBASIC19.16■□□□□ 0.66
USP54Q70EL1 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USP54Q70EL1 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC19.16■□□□□ 0.66
USP54Q70EL1 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
USP54Q70EL1 AC011471.3-201ENST00000623576 402 ntBASIC19.16■□□□□ 0.66
USP54Q70EL1 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC19.16■□□□□ 0.66
USP54Q70EL1 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP54Q70EL1 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC19.16■□□□□ 0.66
USP54Q70EL1 AL672207.1-201ENST00000328462 1570 ntBASIC19.16■□□□□ 0.66
USP54Q70EL1 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USP54Q70EL1 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
USP54Q70EL1 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC19.16■□□□□ 0.66
USP54Q70EL1 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC19.15■□□□□ 0.66
USP54Q70EL1 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP54Q70EL1 BAK1P1-201ENST00000317045 636 ntBASIC19.15■□□□□ 0.66
USP54Q70EL1 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
USP54Q70EL1 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
USP54Q70EL1 RPL35P9-201ENST00000446059 350 ntBASIC19.15■□□□□ 0.66
USP54Q70EL1 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC19.15■□□□□ 0.66
USP54Q70EL1 AC010234.1-201ENST00000494599 870 ntBASIC19.15■□□□□ 0.66
USP54Q70EL1 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC19.15■□□□□ 0.66
USP54Q70EL1 AC084752.1-201ENST00000509766 622 ntBASIC19.15■□□□□ 0.66
USP54Q70EL1 RN7SL556P-201ENST00000582856 298 ntBASIC19.15■□□□□ 0.66
USP54Q70EL1 FO393412.1-201ENST00000619841 382 ntBASIC19.15■□□□□ 0.66
USP54Q70EL1 LINC00431-202ENST00000636375 159 ntBASIC19.15■□□□□ 0.66
USP54Q70EL1 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP54Q70EL1 AC092384.3-202ENST00000564646 2873 ntBASIC19.15■□□□□ 0.66
USP54Q70EL1 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
USP54Q70EL1 GRIA3-208ENST00000620581 2991 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USP54Q70EL1 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC19.15■□□□□ 0.66
USP54Q70EL1 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP54Q70EL1 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
USP54Q70EL1 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
USP54Q70EL1 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC19.14■□□□□ 0.66
USP54Q70EL1 AL135901.1-201ENST00000451812 333 ntBASIC19.14■□□□□ 0.66
USP54Q70EL1 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
USP54Q70EL1 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
USP54Q70EL1 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC19.14■□□□□ 0.66
USP54Q70EL1 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC19.14■□□□□ 0.66
USP54Q70EL1 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC19.14■□□□□ 0.66
USP54Q70EL1 RN7SL832P-201ENST00000607781 1756 ntBASIC19.14■□□□□ 0.65
USP54Q70EL1 AC011498.7-201ENST00000624986 2027 ntBASIC19.14■□□□□ 0.65
USP54Q70EL1 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
USP54Q70EL1 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
USP54Q70EL1 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC19.14■□□□□ 0.65
USP54Q70EL1 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
USP54Q70EL1 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
USP54Q70EL1 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP54Q70EL1 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP54Q70EL1 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP54Q70EL1 PDXDC2P-206ENST00000534700 1315 ntBASIC19.14■□□□□ 0.65
USP54Q70EL1 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP54Q70EL1 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
USP54Q70EL1 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 86.9 ms