Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RXRBP28702 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
RXRBP28702 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC18.97■□□□□ 0.63
RXRBP28702 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC18.97■□□□□ 0.63
RXRBP28702 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
RXRBP28702 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RXRBP28702 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RXRBP28702 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RXRBP28702 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RXRBP28702 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC18.96■□□□□ 0.63
RXRBP28702 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RXRBP28702 NAP1L1-226ENST00000552342 1526 ntTSL 5 BASIC18.96■□□□□ 0.63
RXRBP28702 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RXRBP28702 MCRS1-203ENST00000546244 1686 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RXRBP28702 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
RXRBP28702 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RXRBP28702 OR2T27-201ENST00000344889 954 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
RXRBP28702 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC18.96■□□□□ 0.63
RXRBP28702 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RXRBP28702 PLA2G2A-201ENST00000375111 970 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RXRBP28702 SAA1-202ENST00000405158 675 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
RXRBP28702 PPP1R2P4-201ENST00000424051 595 ntBASIC18.96■□□□□ 0.63
RXRBP28702 AC007881.1-201ENST00000437460 187 ntBASIC18.96■□□□□ 0.63
RXRBP28702 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC18.96■□□□□ 0.63
RXRBP28702 GOLGA2P8-201ENST00000505201 779 ntBASIC18.96■□□□□ 0.63
RXRBP28702 IGHVIII-5-2-201ENST00000522505 261 ntBASIC18.96■□□□□ 0.63
RXRBP28702 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RXRBP28702 AP003040.1-201ENST00000532044 1024 ntBASIC18.96■□□□□ 0.63
RXRBP28702 AL132994.1-201ENST00000554098 400 ntBASIC18.96■□□□□ 0.63
RXRBP28702 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC18.96■□□□□ 0.63
RXRBP28702 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC18.96■□□□□ 0.63
RXRBP28702 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC18.96■□□□□ 0.63
RXRBP28702 AL021707.6-201ENST00000609212 491 ntBASIC18.96■□□□□ 0.63
RXRBP28702 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
RXRBP28702 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RXRBP28702 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
RXRBP28702 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RXRBP28702 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RXRBP28702 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
RXRBP28702 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RXRBP28702 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
RXRBP28702 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
RXRBP28702 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RXRBP28702 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RXRBP28702 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
RXRBP28702 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
RXRBP28702 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
RXRBP28702 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC18.96■□□□□ 0.62
RXRBP28702 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
RXRBP28702 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
RXRBP28702 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RXRBP28702 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RXRBP28702 KRT8P28-201ENST00000433288 1390 ntBASIC18.95■□□□□ 0.62
RXRBP28702 LINC00682-202ENST00000499082 1384 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RXRBP28702 TTC23L-203ENST00000505624 1353 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RXRBP28702 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
RXRBP28702 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RXRBP28702 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC18.95■□□□□ 0.62
RXRBP28702 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC18.95■□□□□ 0.62
RXRBP28702 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
RXRBP28702 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18.95■□□□□ 0.62
RXRBP28702 CYCS-203ENST00000409764 799 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
RXRBP28702 LINC01823-204ENST00000438722 794 ntTSL 3 BASIC18.95■□□□□ 0.62
RXRBP28702 MDH2-205ENST00000461263 648 ntTSL 2 BASIC18.95■□□□□ 0.62
RXRBP28702 PRSS3P1-201ENST00000503996 742 ntBASIC18.95■□□□□ 0.62
RXRBP28702 GLT8D2-204ENST00000547583 862 ntTSL 5 BASIC18.95■□□□□ 0.62
RXRBP28702 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC18.95■□□□□ 0.62
RXRBP28702 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC18.95■□□□□ 0.62
RXRBP28702 AC011483.3-201ENST00000601506 826 ntTSL 3 BASIC18.95■□□□□ 0.62
RXRBP28702 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC18.95■□□□□ 0.62
RXRBP28702 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC18.95■□□□□ 0.62
RXRBP28702 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC18.95■□□□□ 0.62
RXRBP28702 AC148476.1-201ENST00000622182 705 ntBASIC18.95■□□□□ 0.62
RXRBP28702 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
RXRBP28702 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
RXRBP28702 AL807740.1-201ENST00000636971 567 ntTSL 4 BASIC18.95■□□□□ 0.62
RXRBP28702 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC18.95■□□□□ 0.62
RXRBP28702 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.95■□□□□ 0.62
RXRBP28702 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC18.95■□□□□ 0.62
RXRBP28702 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
RXRBP28702 RPL13AP3-202ENST00000494676 1473 ntBASIC18.95■□□□□ 0.62
RXRBP28702 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RXRBP28702 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
RXRBP28702 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RXRBP28702 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
RXRBP28702 CICP11-201ENST00000434745 2827 ntBASIC18.95■□□□□ 0.62
RXRBP28702 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RXRBP28702 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RXRBP28702 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RXRBP28702 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RXRBP28702 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RXRBP28702 AC018470.1-201ENST00000624790 3129 ntBASIC18.94■□□□□ 0.62
RXRBP28702 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
RXRBP28702 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.94■□□□□ 0.62
RXRBP28702 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RXRBP28702 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RXRBP28702 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
RXRBP28702 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
RXRBP28702 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RXRBP28702 GH1-203ENST00000351388 685 ntTSL 2 BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms