Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC17.59■□□□□ 0.41
HMGB1P09429 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB1P09429 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB1P09429 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC17.59■□□□□ 0.41
HMGB1P09429 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGB1P09429 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
HMGB1P09429 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HMGB1P09429 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
HMGB1P09429 AC020910.5-201ENST00000623668 1865 ntBASIC17.58■□□□□ 0.41
HMGB1P09429 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
HMGB1P09429 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC17.58■□□□□ 0.41
HMGB1P09429 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HMGB1P09429 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
HMGB1P09429 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HMGB1P09429 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
HMGB1P09429 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
HMGB1P09429 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
HMGB1P09429 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HMGB1P09429 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HMGB1P09429 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HMGB1P09429 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
HMGB1P09429 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HMGB1P09429 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC17.58■□□□□ 0.4
HMGB1P09429 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
HMGB1P09429 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC17.58■□□□□ 0.4
HMGB1P09429 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB1P09429 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB1P09429 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB1P09429 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC17.58■□□□□ 0.4
HMGB1P09429 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB1P09429 CNN2P8-201ENST00000421872 913 ntBASIC17.58■□□□□ 0.4
HMGB1P09429 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC17.58■□□□□ 0.4
HMGB1P09429 CDC23-208ENST00000505120 455 ntTSL 3 BASIC17.58■□□□□ 0.4
HMGB1P09429 AL391280.1-201ENST00000506969 1062 ntBASIC17.58■□□□□ 0.4
HMGB1P09429 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC17.58■□□□□ 0.4
HMGB1P09429 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC17.58■□□□□ 0.4
HMGB1P09429 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC17.58■□□□□ 0.4
HMGB1P09429 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB1P09429 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC17.58■□□□□ 0.4
HMGB1P09429 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC17.58■□□□□ 0.4
HMGB1P09429 CECR7-204ENST00000609932 568 ntTSL 2 BASIC17.58■□□□□ 0.4
HMGB1P09429 MIR6074-201ENST00000612054 107 ntBASIC17.58■□□□□ 0.4
HMGB1P09429 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
HMGB1P09429 AP001002.3-201ENST00000623482 206 ntBASIC17.58■□□□□ 0.4
HMGB1P09429 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
HMGB1P09429 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB1P09429 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB1P09429 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB1P09429 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
HMGB1P09429 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC17.58■□□□□ 0.4
HMGB1P09429 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC17.58■□□□□ 0.4
HMGB1P09429 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB1P09429 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HMGB1P09429 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC17.58■□□□□ 0.4
HMGB1P09429 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB1P09429 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC17.57■□□□□ 0.4
HMGB1P09429 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB1P09429 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB1P09429 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
HMGB1P09429 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC17.57■□□□□ 0.4
HMGB1P09429 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC17.57■□□□□ 0.4
HMGB1P09429 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB1P09429 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB1P09429 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB1P09429 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB1P09429 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB1P09429 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB1P09429 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB1P09429 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB1P09429 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC17.57■□□□□ 0.4
HMGB1P09429 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC17.57■□□□□ 0.4
HMGB1P09429 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
HMGB1P09429 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
HMGB1P09429 TMEM14DP-201ENST00000422205 345 ntBASIC17.57■□□□□ 0.4
HMGB1P09429 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB1P09429 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB1P09429 KRT43P-201ENST00000434019 910 ntBASIC17.57■□□□□ 0.4
HMGB1P09429 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC17.57■□□□□ 0.4
HMGB1P09429 FTH1P14-201ENST00000482930 551 ntBASIC17.57■□□□□ 0.4
HMGB1P09429 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC17.57■□□□□ 0.4
HMGB1P09429 ECM1P1-201ENST00000604092 1279 ntBASIC17.57■□□□□ 0.4
HMGB1P09429 AC006453.4-201ENST00000636949 1252 ntBASIC17.57■□□□□ 0.4
HMGB1P09429 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB1P09429 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC17.57■□□□□ 0.4
HMGB1P09429 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB1P09429 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC17.57■□□□□ 0.4
HMGB1P09429 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB1P09429 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC17.57■□□□□ 0.4
HMGB1P09429 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
HMGB1P09429 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
HMGB1P09429 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC17.57■□□□□ 0.4
HMGB1P09429 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC17.57■□□□□ 0.4
HMGB1P09429 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB1P09429 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC17.57■□□□□ 0.4
HMGB1P09429 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB1P09429 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB1P09429 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB1P09429 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HMGB1P09429 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HMGB1P09429 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 9.9 ms