Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 LINC00388-201ENST00000412714 663 ntTSL 5 BASIC10.35□□□□□ -0.75
PRKDCP78527 AL162151.1-201ENST00000423922 561 ntTSL 4 BASIC10.35□□□□□ -0.75
PRKDCP78527 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC10.35□□□□□ -0.75
PRKDCP78527 AC011284.1-201ENST00000427920 856 ntTSL 4 BASIC10.35□□□□□ -0.75
PRKDCP78527 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC10.35□□□□□ -0.75
PRKDCP78527 AL035414.1-201ENST00000451327 857 ntBASIC10.35□□□□□ -0.75
PRKDCP78527 AP000533.1-201ENST00000456143 1177 ntBASIC10.35□□□□□ -0.75
PRKDCP78527 AC005740.1-201ENST00000515639 522 ntBASIC10.35□□□□□ -0.75
PRKDCP78527 RN7SKP155-201ENST00000516031 288 ntBASIC10.35□□□□□ -0.75
PRKDCP78527 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC10.35□□□□□ -0.75
PRKDCP78527 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC10.35□□□□□ -0.75
PRKDCP78527 LINC00969-241ENST00000600527 852 ntTSL 5 BASIC10.35□□□□□ -0.75
PRKDCP78527 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC10.35□□□□□ -0.75
PRKDCP78527 AC073869.4-201ENST00000620841 800 ntBASIC10.35□□□□□ -0.75
PRKDCP78527 LINC00969-322ENST00000630170 584 ntTSL 5 BASIC10.35□□□□□ -0.75
PRKDCP78527 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC10.35□□□□□ -0.75
PRKDCP78527 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC10.35□□□□□ -0.75
PRKDCP78527 KHSRPP1-201ENST00000427983 1768 ntBASIC10.35□□□□□ -0.75
PRKDCP78527 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC10.35□□□□□ -0.75
PRKDCP78527 AL121753.2-201ENST00000624581 1461 ntBASIC10.35□□□□□ -0.75
PRKDCP78527 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
PRKDCP78527 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC10.35□□□□□ -0.75
PRKDCP78527 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
PRKDCP78527 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
PRKDCP78527 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
PRKDCP78527 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC10.35□□□□□ -0.75
PRKDCP78527 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC10.35□□□□□ -0.75
PRKDCP78527 SSR4P1-203ENST00000599569 2260 ntBASIC10.35□□□□□ -0.75
PRKDCP78527 TONSL-AS1-201ENST00000442850 428 ntTSL 5 BASIC10.35□□□□□ -0.75
PRKDCP78527 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC10.35□□□□□ -0.75
PRKDCP78527 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
PRKDCP78527 AL080250.1-203ENST00000607799 747 ntTSL 2 BASIC10.35□□□□□ -0.75
PRKDCP78527 SNHG5-213ENST00000622963 753 ntTSL 5 BASIC10.35□□□□□ -0.75
PRKDCP78527 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC10.35□□□□□ -0.75
PRKDCP78527 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
PRKDCP78527 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC10.35□□□□□ -0.75
PRKDCP78527 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC10.35□□□□□ -0.75
PRKDCP78527 PDXDC2P-206ENST00000534700 1315 ntBASIC10.35□□□□□ -0.75
PRKDCP78527 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC10.35□□□□□ -0.75
PRKDCP78527 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC10.35□□□□□ -0.75
PRKDCP78527 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC10.35□□□□□ -0.75
PRKDCP78527 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
PRKDCP78527 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
PRKDCP78527 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC10.35□□□□□ -0.75
PRKDCP78527 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
PRKDCP78527 GALP-202ENST00000440823 889 ntTSL 5 BASIC10.35□□□□□ -0.75
PRKDCP78527 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
PRKDCP78527 C12orf45-205ENST00000622317 1078 ntTSL 5 BASIC10.35□□□□□ -0.75
PRKDCP78527 AL499606.1-201ENST00000627866 413 ntTSL 3 BASIC10.35□□□□□ -0.75
PRKDCP78527 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
PRKDCP78527 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC10.34□□□□□ -0.75
PRKDCP78527 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
PRKDCP78527 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC10.34□□□□□ -0.75
PRKDCP78527 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
PRKDCP78527 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC10.34□□□□□ -0.75
PRKDCP78527 CES3-203ENST00000543856 3178 ntTSL 2 BASIC10.34□□□□□ -0.75
PRKDCP78527 MMP19-202ENST00000409200 1431 ntTSL 2 BASIC10.34□□□□□ -0.75
PRKDCP78527 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC10.34□□□□□ -0.75
PRKDCP78527 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
PRKDCP78527 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC10.34□□□□□ -0.75
PRKDCP78527 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
PRKDCP78527 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
PRKDCP78527 AL031590.1-202ENST00000641466 1737 ntBASIC10.34□□□□□ -0.75
PRKDCP78527 YY1P2-201ENST00000438766 948 ntBASIC10.34□□□□□ -0.75
PRKDCP78527 ALDOAP1-201ENST00000491506 1078 ntBASIC10.34□□□□□ -0.75
PRKDCP78527 SPRY4-AS1-206ENST00000515288 539 ntTSL 2 BASIC10.34□□□□□ -0.75
PRKDCP78527 AC025419.1-201ENST00000537250 690 ntTSL 3 BASIC10.34□□□□□ -0.75
PRKDCP78527 AL445363.2-201ENST00000554608 837 ntTSL 2 BASIC10.34□□□□□ -0.75
PRKDCP78527 PRR20FP-201ENST00000603320 180 ntBASIC10.34□□□□□ -0.75
PRKDCP78527 AL445363.1-201ENST00000623749 952 ntTSL 2 BASIC10.34□□□□□ -0.75
PRKDCP78527 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC10.34□□□□□ -0.75
PRKDCP78527 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC10.34□□□□□ -0.75
PRKDCP78527 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
PRKDCP78527 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
PRKDCP78527 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC10.34□□□□□ -0.75
PRKDCP78527 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC10.34□□□□□ -0.75
PRKDCP78527 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
PRKDCP78527 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC10.34□□□□□ -0.75
PRKDCP78527 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC10.34□□□□□ -0.75
PRKDCP78527 FTHL17-201ENST00000359202 813 ntAPPRIS P1 BASIC10.34□□□□□ -0.75
PRKDCP78527 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC10.34□□□□□ -0.75
PRKDCP78527 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC10.34□□□□□ -0.75
PRKDCP78527 KRT18P33-201ENST00000398525 1043 ntBASIC10.34□□□□□ -0.75
PRKDCP78527 U3.41-201ENST00000408711 219 ntBASIC10.34□□□□□ -0.75
PRKDCP78527 FTH1P18-201ENST00000412071 549 ntBASIC10.34□□□□□ -0.75
PRKDCP78527 AP003170.2-201ENST00000544730 786 ntBASIC10.34□□□□□ -0.75
PRKDCP78527 AC004801.1-201ENST00000549557 360 ntBASIC10.34□□□□□ -0.75
PRKDCP78527 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC10.34□□□□□ -0.75
PRKDCP78527 AL021707.6-201ENST00000609212 491 ntBASIC10.34□□□□□ -0.75
PRKDCP78527 HPX-213ENST00000615166 826 ntTSL 5 BASIC10.34□□□□□ -0.75
PRKDCP78527 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC10.34□□□□□ -0.75
PRKDCP78527 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
PRKDCP78527 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
PRKDCP78527 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
PRKDCP78527 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC10.34□□□□□ -0.75
PRKDCP78527 AC024909.3-201ENST00000611513 2257 ntBASIC10.34□□□□□ -0.75
PRKDCP78527 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC10.34□□□□□ -0.75
PRKDCP78527 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
PRKDCP78527 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC10.34□□□□□ -0.75
PRKDCP78527 CRYZL1-205ENST00000399442 612 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms