Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
COL4A1P02462 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC17.79■□□□□ 0.44
COL4A1P02462 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A1P02462 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A1P02462 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC17.79■□□□□ 0.44
COL4A1P02462 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
COL4A1P02462 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A1P02462 HPGD-203ENST00000422112 805 ntTSL 2 BASIC17.79■□□□□ 0.44
COL4A1P02462 LYPLA2P1-203ENST00000447689 696 ntBASIC17.79■□□□□ 0.44
COL4A1P02462 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC17.79■□□□□ 0.44
COL4A1P02462 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC17.79■□□□□ 0.44
COL4A1P02462 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC17.79■□□□□ 0.44
COL4A1P02462 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A1P02462 AC009084.3-201ENST00000623356 437 ntBASIC17.79■□□□□ 0.44
COL4A1P02462 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
COL4A1P02462 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
COL4A1P02462 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC17.79■□□□□ 0.44
COL4A1P02462 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC17.79■□□□□ 0.44
COL4A1P02462 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC17.79■□□□□ 0.44
COL4A1P02462 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A1P02462 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A1P02462 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A1P02462 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A1P02462 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A1P02462 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A1P02462 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A1P02462 FES-203ENST00000394302 2133 ntTSL 5 BASIC17.78■□□□□ 0.44
COL4A1P02462 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A1P02462 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
COL4A1P02462 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A1P02462 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A1P02462 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A1P02462 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.78■□□□□ 0.44
COL4A1P02462 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC17.78■□□□□ 0.44
COL4A1P02462 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A1P02462 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A1P02462 AL161932.2-201ENST00000435436 679 ntBASIC17.78■□□□□ 0.44
COL4A1P02462 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC17.78■□□□□ 0.44
COL4A1P02462 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC17.78■□□□□ 0.44
COL4A1P02462 AP000911.2-201ENST00000534330 502 ntBASIC17.78■□□□□ 0.44
COL4A1P02462 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC17.78■□□□□ 0.44
COL4A1P02462 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC17.78■□□□□ 0.44
COL4A1P02462 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC17.78■□□□□ 0.44
COL4A1P02462 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
COL4A1P02462 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
COL4A1P02462 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
COL4A1P02462 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC17.78■□□□□ 0.44
COL4A1P02462 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC17.78■□□□□ 0.44
COL4A1P02462 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A1P02462 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A1P02462 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
COL4A1P02462 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL4A1P02462 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A1P02462 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
COL4A1P02462 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
COL4A1P02462 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A1P02462 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
COL4A1P02462 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A1P02462 GUSBP10-201ENST00000417412 665 ntBASIC17.77■□□□□ 0.44
COL4A1P02462 ALG1L13P-202ENST00000519320 584 ntBASIC17.77■□□□□ 0.44
COL4A1P02462 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A1P02462 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC17.77■□□□□ 0.44
COL4A1P02462 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC17.77■□□□□ 0.44
COL4A1P02462 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A1P02462 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
COL4A1P02462 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC17.77■□□□□ 0.44
COL4A1P02462 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL4A1P02462 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
COL4A1P02462 AGGF1P1-201ENST00000509500 2073 ntBASIC17.77■□□□□ 0.44
COL4A1P02462 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL4A1P02462 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC17.77■□□□□ 0.43
COL4A1P02462 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.43
COL4A1P02462 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
COL4A1P02462 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL4A1P02462 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
COL4A1P02462 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC17.77■□□□□ 0.43
COL4A1P02462 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
COL4A1P02462 AC097065.1-201ENST00000425737 517 ntBASIC17.77■□□□□ 0.43
COL4A1P02462 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC17.77■□□□□ 0.43
COL4A1P02462 RPL7P35-201ENST00000446943 740 ntBASIC17.77■□□□□ 0.43
COL4A1P02462 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC17.77■□□□□ 0.43
COL4A1P02462 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC17.77■□□□□ 0.43
COL4A1P02462 LINC00634-202ENST00000505157 222 ntBASIC17.77■□□□□ 0.43
COL4A1P02462 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC17.77■□□□□ 0.43
COL4A1P02462 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
COL4A1P02462 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL4A1P02462 DRG2-220ENST00000583355 891 ntTSL 3 BASIC17.77■□□□□ 0.43
COL4A1P02462 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
COL4A1P02462 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
COL4A1P02462 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
COL4A1P02462 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A1P02462 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A1P02462 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A1P02462 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A1P02462 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A1P02462 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC17.76■□□□□ 0.43
COL4A1P02462 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A1P02462 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A1P02462 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A1P02462 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms