Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.2□□□□□ -0.14
ATG4BQ9Y4P1 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 SALL4P5-201ENST00000419001 1760 ntBASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 AC003102.2-201ENST00000589195 1469 ntBASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 ZBTB12BP-201ENST00000314232 1122 ntBASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 AC132938.4-201ENST00000623835 848 ntBASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 AC015656.1-201ENST00000624209 3578 ntBASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
ATG4BQ9Y4P1 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 GUK1-206ENST00000366723 845 ntTSL 5 BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 AC007969.1-201ENST00000433675 447 ntBASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 FTH1P14-201ENST00000482930 551 ntBASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 APOC4-201ENST00000591600 348 ntTSL 3 BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.18□□□□□ -0.14
ATG4BQ9Y4P1 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms